Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2446
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    28   1.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    28   1.4  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    27   1.9  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   7.7  

>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  NFEKTGCELLSLVLFFVYNSFYTC 106
           +FE TGCE+ + VLF + N  + C
Sbjct: 320 HFEWTGCEIEASVLFIMGNVLFLC 343


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  NFEKTGCELLSLVLFFVYNSFYTC 106
           +FE TGCE+ + VLF + N  + C
Sbjct: 287 HFEWTGCEIEASVLFIMGNVLFLC 310


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  NFEKTGCELLSLVLFFVYNSFYTC 106
           +FE+ GCE+ + VLF + N  + C
Sbjct: 249 HFERIGCEIEASVLFIMGNVLFLC 272


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 334 SYRGMYSNLL*HTKTCYRNFTNNGEIG 414
           S R  YSNL  + +    NF N+G++G
Sbjct: 507 SERDFYSNLARNMERTMSNFVNSGKLG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,822
Number of Sequences: 5004
Number of extensions: 50598
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)