Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2444
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 4.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 26 5.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.8
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 7.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.8
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 110 SSKFGKNIITKKKLLQLFR*SKLN*SSIKNYRTVDANTK*NAPFI-NCQDECRVIS*MPL 286
S + K I+ + + + L S N R+ + K N N V+S L
Sbjct: 144 SQDYEKESISSSQFSKKYSEGSLK-SQQSNTRSNSVHEKQNTDHASNASSSSSVVSSPSL 202
Query: 287 KPNNLSPLECY 319
KPNN SPL+ +
Sbjct: 203 KPNNTSPLKLF 213
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 404 HYTNIVYKIASFWKFCYVIL 345
H + YK +S WKFC IL
Sbjct: 318 HLLHTEYKNSSLWKFCSYIL 337
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -1
Query: 177 SLLHRNS*RSFFFVMIFFPNFELQMALL*NVKMSLRPNSLSLI 49
SLL ++ R ++++ P+ ++ + L ++S+ P+SLSL+
Sbjct: 741 SLLCESALRRILRILLYLPHSDMAITLQFFKQLSMVPSSLSLL 783
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 287 KPNNLSPLECYDLHILNIVIKLRSK 361
+P NL ++ D H++N+ K+ SK
Sbjct: 17 RPENLDGIQTSDEHLINLFAKILSK 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,326
Number of Sequences: 5004
Number of extensions: 53018
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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