Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2444
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    29   3.5  
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    28   8.0  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    28   8.0  

>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 249 QLIKGAFYLVLASTVR*FLIELQLSLLHRNS*RSFFFVMIFFPNFELQMALL-*NVKMSL 73
           Q++KG     ++STV  F + L L LL R     F  ++I   N+    A+L    K S 
Sbjct: 635 QIMKGCMVYAVSSTVHAFTVRLIL-LLWRLELPCFPMLVIAACNYCTSTAMLFERAKSSQ 693

Query: 72  RPNSLSLIDIIINRVSF 22
            P+SL    II+   +F
Sbjct: 694 SPDSLKAKKIIVTGAAF 710


>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +3

Query: 126 KIS*QKKNFFSYFDEVNLIEVQLKTIELLMLIPNKTLL 239
           K+S QK +  SY DE+   +++ +T+E +  +P+K+++
Sbjct: 24  KVSSQKSHLVSYHDEIGHQDIE-RTLEHIFDLPHKSVV 60


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 461  TFKRIIFACTILMWVKFVTG 520
            T  +++  C ++MWV+++TG
Sbjct: 2471 TISKVLDQCALIMWVQYITG 2490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,835
Number of Sequences: 37544
Number of extensions: 271747
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)