Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2444
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 1   NVLLTILKRYSVNNNIDERKAIWSKRHFYILQKSHLKFKIWKKYHNKKKTSSAISMK 171
           ++LLT   +Y VN    E+  +W K+ F   ++  LK ++ K   ++K T S+I  K
Sbjct: 295 HILLTDHVKYLVNFGFSEKALLWWKKRFE-TEQEQLKVQVPKV--DEKPTESSIPTK 348


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 4   VLLTILKRYSVNNNIDERKAIWSKRHFYILQKSHLKFKIW 123
           +L T     ++ NN+DE KA++ K     L+    K KIW
Sbjct: 786 LLETTFSLTTLGNNVDEEKALFKKEDRDGLKSKLDKLKIW 825


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 289  FKRHLAYYATFILA-INKRSVLFGISIN 209
            F  HL   ATF+ A  NKR  LFG S+N
Sbjct: 3172 FDYHLRAVATFLEAKANKRKCLFGASMN 3199


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 289  FKRHLAYYATFILA-INKRSVLFGISIN 209
            F  HL   ATF+ A  NKR  LFG S+N
Sbjct: 3174 FDYHLRAVATFLEAKANKRKCLFGASMN 3201


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 326 HILNIVIKLRSKISRTTLFCIQYSCSVVFLCI 421
           H+L I   L S ++ T +F I  SCS + LCI
Sbjct: 40  HMLTITT-LSSMLNPTNMFLISMSCSQLALCI 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,633,126
Number of Sequences: 27780
Number of extensions: 289482
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)