Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2442
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  KGASQARLCVHRQQCVPLTLQSHRDYLDRVLASRHVA 175
           +  +QAR+ +     + + LQ  RD L  ++   HVA
Sbjct: 311 RSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLHVA 347


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 NDAVNRVTDVLSRRDEKRERD 147
           NDA  RV   L   +E+R+R+
Sbjct: 404 NDARRRVEAALEAVEEERQRE 424


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 196 IGSPMYCRDVTRSENAIKIITV 131
           +G   YC   T S  A+KI+ +
Sbjct: 418 VGFGAYCAAHTDSSGAVKIVNM 439


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 196 IGSPMYCRDVTRSENAIKIITV 131
           +G   YC   T S  A+KI+ +
Sbjct: 418 VGFGAYCAAHTDSSGAMKIVNM 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,932
Number of Sequences: 438
Number of extensions: 2199
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)