Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2440
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   151   7e-38
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.61 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   5.6  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   5.6  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.5  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  151 bits (367), Expect = 7e-38
 Identities = 78/187 (41%), Positives = 114/187 (60%), Gaps = 1/187 (0%)
 Frame = +3

Query: 69  MKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 248
           M   +   + D ++F N+++ T+ Q+AR FNS+ + PRK   +L+KI YL+  GE    +
Sbjct: 1   MSYSKKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEK 60

Query: 249 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKD-MTGKDDEYRPA 425
           +AT++FF  TKLFQ KD  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG++  YRP 
Sbjct: 61  QATELFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPN 120

Query: 426 AIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINEAQE 605
           AIR+L  + D+  + AIER +   IVD                     D+V RW NE Q+
Sbjct: 121 AIRSLIRVIDANTVPAIERILTTGIVDPISAVASAALVSAYHLYPVAKDIVSRWNNEVQD 180

Query: 606 AMTSDHV 626
           A+TS +V
Sbjct: 181 AVTSHNV 187


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 29/130 (22%), Positives = 54/130 (41%)
 Frame = -1

Query: 619 SEVMASCASFIQRRTKSGTVADRCKAETSAADPTAGFLSTIACFMYLSIACSIVLSVMLH 440
           S  + S ++     T S ++A      T++A PT+  L++ +       + S   S +  
Sbjct: 72  SSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLAS 131

Query: 439 KARMAAGRYSSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNI 260
            +  ++   SSS+   S  S   T  +  +   NS     T   + TS   +S   A N 
Sbjct: 132 SSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSA-TPTSSATSSSLSS-TAASNS 189

Query: 259 SVASCVVNSS 230
           + +S + +SS
Sbjct: 190 ATSSSLASSS 199


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 156 FNSTPVHPRKCIHILTKILYLLNQGEE 236
           F   PV       I  KIL+LLN+G E
Sbjct: 281 FPQPPVESHSSFDIKQKILHLLNEGNE 307


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 127 LSRFWKTLLSSSFPSRRAFIML 62
           L +FW  LL+++FP ++A   L
Sbjct: 401 LHQFWNALLNTTFPDKKAMAPL 422


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  EEDSNVFQNLDKTTLLQEARYFNSTPV 173
           EED N  +N  K+ +   A+Y  ST V
Sbjct: 302 EEDPNPLKNKSKSPIAHGAKYMTSTEV 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,170
Number of Sequences: 5004
Number of extensions: 59093
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)