Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2438
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.0  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   7.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 14  RRNERRQNSNFERFLKKK 67
           ++ +R +NSNF +FLKKK
Sbjct: 100 KKGKRAKNSNFSKFLKKK 117


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -3

Query: 217 LYRKYYCYFSKASFQFKSQYNKKE 146
           +Y+K+  + +K SF++++ YN++E
Sbjct: 137 IYQKWLRFSTKKSFEWEALYNEEE 160


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 119 HRCFLLKTLAQE*KNSGFFFLRIVRNLNF 33
           HRCF    L    + SG FFL  ++N NF
Sbjct: 891 HRCFQYMVLCAIVQFSGVFFL-YLKNYNF 918


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,170
Number of Sequences: 5004
Number of extensions: 36588
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)