Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2438
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 27 6.4
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 27 6.4
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 27 6.4
Z75539-3|CAA99845.1| 228|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z75531-13|CAA99808.1| 228|Caenorhabditis elegans Hypothetical p... 27 8.5
X17075-1|CAA34927.1| 75|Caenorhabditis elegans ceh-11 protein. 27 8.5
L19247-1|AAC37166.1| 223|Caenorhabditis elegans homeobox protei... 27 8.5
L15201-6|AAP82660.1| 222|Caenorhabditis elegans Egg laying defe... 27 8.5
L15201-5|AAA27943.2| 219|Caenorhabditis elegans Egg laying defe... 27 8.5
L15201-4|AAN84878.1| 223|Caenorhabditis elegans Egg laying defe... 27 8.5
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 193 FSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHK 86
FS A F F + + K +LP+ + + A + +W+K
Sbjct: 666 FSGAQFDFAAIFEKNSFLPKDLHASLDAVFGGNWNK 701
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 193 FSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHK 86
FS A F F + + K +LP+ + + A + +W+K
Sbjct: 666 FSGAQFDFAAIFEKNSFLPKDLHASLDAVFGGNWNK 701
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 193 FSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHK 86
FS A F F + + K +LP+ + + A + +W+K
Sbjct: 666 FSGAQFDFAAIFEKNSFLPKDLHASLDAVFGGNWNK 701
>Z75539-3|CAA99845.1| 228|Caenorhabditis elegans Hypothetical
protein C54D10.10 protein.
Length = 228
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 237 SYYILLCCIENITAIFLKQVSNLRANTIKK 148
S ++LLCCI +++AI +Q + N K
Sbjct: 17 SIFLLLCCISSVSAINCRQEKDTGVNCDNK 46
>Z75531-13|CAA99808.1| 228|Caenorhabditis elegans Hypothetical
protein C54D10.10 protein.
Length = 228
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 237 SYYILLCCIENITAIFLKQVSNLRANTIKK 148
S ++LLCCI +++AI +Q + N K
Sbjct: 17 SIFLLLCCISSVSAINCRQEKDTGVNCDNK 46
>X17075-1|CAA34927.1| 75|Caenorhabditis elegans ceh-11 protein.
Length = 75
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 214 YRKYYCYFSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHKNRRIQ 71
Y++Y +A FQ S +KK+ ++T + K W +NRR++
Sbjct: 9 YQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMK 56
>L19247-1|AAC37166.1| 223|Caenorhabditis elegans homeobox protein
protein.
Length = 223
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 214 YRKYYCYFSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHKNRRIQ 71
Y++Y +A FQ S +KK+ ++T + K W +NRR++
Sbjct: 119 YQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMK 166
>L15201-6|AAP82660.1| 222|Caenorhabditis elegans Egg laying
defective protein 5,isoform c protein.
Length = 222
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 214 YRKYYCYFSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHKNRRIQ 71
Y++Y +A FQ S +KK+ ++T + K W +NRR++
Sbjct: 118 YQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMK 165
>L15201-5|AAA27943.2| 219|Caenorhabditis elegans Egg laying
defective protein 5,isoform a protein.
Length = 219
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 214 YRKYYCYFSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHKNRRIQ 71
Y++Y +A FQ S +KK+ ++T + K W +NRR++
Sbjct: 115 YQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMK 162
>L15201-4|AAN84878.1| 223|Caenorhabditis elegans Egg laying
defective protein 5,isoform b protein.
Length = 223
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 214 YRKYYCYFSKASFQFKSQYNKKEYLPRIIRTFIVASY*KHWHKNRRIQ 71
Y++Y +A FQ S +KK+ ++T + K W +NRR++
Sbjct: 119 YQRYQTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMK 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,531
Number of Sequences: 27780
Number of extensions: 194639
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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