Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2438
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 14  RRNERRQNSNFERFLKKKNLNS 79
           R   RR   N+ERF  K N+NS
Sbjct: 488 RLKARRACMNYERFTYKININS 509


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 14  RRNERRQNSNFERFLKKKNLNS 79
           R   RR   N+ERF  K N+NS
Sbjct: 488 RLKARRACMNYERFTYKININS 509


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 477 IFTNFPIYKY 448
           I++NFPIYKY
Sbjct: 312 IWSNFPIYKY 321


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 477 IFTNFPIYKY 448
           I++NFPIYKY
Sbjct: 312 IWSNFPIYKY 321


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 262 SFAFETLFQ--LLHFTLLYRKYYCYFSKASFQFKSQYNKKE 146
           +F F T+ Q  ++H+   Y    CYFS    + ++  +++E
Sbjct: 285 AFIFATIIQFAVVHYFTKYGSGECYFSSDLSESETSSDEEE 325


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 20  NERRQNSNFERFLKKKNLNSSIL--VPVFLVGSNDEG 124
           N+   N N ERF K K   +++       +  SNDEG
Sbjct: 543 NQLNYNENIERFFKSKPPVATMYGSDEEIINSSNDEG 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,095
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)