Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2437
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    35   1.8  
UniRef50_A0D350 Cluster: Chromosome undetermined scaffold_36, wh...    34   4.2  
UniRef50_Q9SH05 Cluster: F28K19.17; n=1; Arabidopsis thaliana|Re...    33   5.6  
UniRef50_Q5BPU6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q0VMD6 Cluster: Polyhydroxyalkanoate synthase; n=2; Gam...    33   9.7  
UniRef50_Q4DPV1 Cluster: Phospholipid-transporting ATPase-like p...    33   9.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 139 WVA*LSAHLVLSGYWSP 189
           WV  L+AHLVLSGYWSP
Sbjct: 159 WVDELTAHLVLSGYWSP 175


>UniRef50_A0D350 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 368

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 376 INYVWIVRITVAVLCFIFMCLFIWETAQNKQYVTNRQTN 492
           +N + ++ +   ++CF+FM L +     N++YV N +TN
Sbjct: 330 VNNICLLVLLADIICFVFMTLLLICLGNNRKYVNNLRTN 368


>UniRef50_Q9SH05 Cluster: F28K19.17; n=1; Arabidopsis thaliana|Rep:
           F28K19.17 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 211

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 201 NVNVPPTLRYKLQGLNIQQLPCLSNRNALLLYGRNRQGA--GTYPRRLTRGPTTSNYANY 374
           +VN  P LR++L  +N +Q P   N NA++       G    +YP R   G ++S+ A  
Sbjct: 99  SVNQSP-LRFRLPNINNRQAPVRPNANAIIPPQGEILGCRRRSYPSRFEFGQSSSSSAQR 157

Query: 375 NKLCLDSENYCGSTML 422
            ++   SEN  GST +
Sbjct: 158 RRIVPASEN-VGSTSI 172


>UniRef50_Q5BPU6 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 420

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 201 NVNVPPTLRYKLQGLNIQQLPCLSNRNALLLYGRNRQGA--GTYPRRLTRGPTTSNYANY 374
           +VN  P LR++L  +N +Q P   N NA++       G    +YP R   G ++S+ A  
Sbjct: 311 SVNQSP-LRFRLPNINNRQAPVRPNANAIIPPQGEILGCRRRSYPSRFEFGQSSSSSAQR 369

Query: 375 NKLCLDSENYCGSTML 422
            ++   SEN  GST +
Sbjct: 370 RRIVPASEN-VGSTSI 384


>UniRef50_Q0VMD6 Cluster: Polyhydroxyalkanoate synthase; n=2;
           Gammaproteobacteria|Rep: Polyhydroxyalkanoate synthase -
           Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
           11573)
          Length = 386

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 407 WQYYALF-LCVYLFGKQPKTNNMLQIGKQTNFHMVSAVNIRY 529
           W +  LF LC    GK P  +N++ +G  T++H   ++  +Y
Sbjct: 166 WSFGGLFSLCYAALGKDPDISNLVLVGAPTDYHRNGSLGSQY 207


>UniRef50_Q4DPV1 Cluster: Phospholipid-transporting ATPase-like
            protein, putative; n=1; Trypanosoma cruzi|Rep:
            Phospholipid-transporting ATPase-like protein, putative -
            Trypanosoma cruzi
          Length = 1259

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 401  LLWQYYALFLCVYLFGKQPKTNNMLQIGKQTNFHM 505
            L+W   ALFLC+ L+G   + +++L++ +  +F++
Sbjct: 1098 LIWSVVALFLCLSLYGLLSENHSLLELLRNASFYL 1132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,250,589
Number of Sequences: 1657284
Number of extensions: 14849429
Number of successful extensions: 33235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33218
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)