Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2437
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   0.70 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.9  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   8.6  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   8.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   8.6  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 348 PTTSNYANYNKLCLDSENYCGSTMLYFYVFIYLGNS 455
           P  ++Y NY +   D   YCG++M + + FI    S
Sbjct: 606 PILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARS 641


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 330 ADRYQHPAYFCRKAVMHFGLRGRAAVVY*----DLGAYISRWVAHLRCRCLWAPVTT*HQ 163
           A  Y  P        M+FG+  RAAV          A  S  VA LR R  W+      +
Sbjct: 395 AGMYLSPTLAHEVVYMYFGIAMRAAVANGMHKKSANAQFSGDVAELRKRLFWSVYCMERK 454

Query: 162 VG*ELGHP 139
           +G  LG P
Sbjct: 455 IGISLGRP 462


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
 Frame = +3

Query: 204 VNVPPTLRYKLQGLNIQQ-------LPCLSNRNALLLYGRNRQGAGTYPRRLTRGPTTSN 362
           V VPPT  + L  LN+Q        +   + RN +       +  G YP R ++ P  S 
Sbjct: 161 VEVPPTYHF-LSLLNVQLRIQPIWWMDEFAERNGIESLLSALRNLGHYPERASKTPLESQ 219

Query: 363 YANYNKLCLDSEN 401
                  CL+SEN
Sbjct: 220 IIQSLFHCLNSEN 232


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 307 GRVLVPIRAGLQEVLLPVIMQIIINYVWIVRITVAVLCFIF 429
           GRV   I +G + +L+ +I Q   N +    I  A+ CF++
Sbjct: 861 GRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVY 901


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 300 RNRQGAGTYPRRL-TRGPTTSNYANYNKLCLDSENYCGSTML 422
           R RQ    YP  +  R     N+ N     L +ENY G+ +L
Sbjct: 99  RYRQRKSVYPMLMFLRSSLLRNFGNIGNSSLYTENYSGTKIL 140


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = +3

Query: 117 IFFYCLDMGGLALSPPGVKWLL-----EPIDIYNVNVPPTLRYKLQG 242
           +  +C D+    L  P V W++     E +D Y   V  T RY   G
Sbjct: 337 VVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSG 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,008
Number of Sequences: 5004
Number of extensions: 64971
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)