Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2437
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    29   3.5  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    29   3.5  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    29   4.6  
Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    28   8.0  

>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +1

Query: 373 IINYVWIVRITVAVLCFIFMCLFIWETAQN 462
           +INY W+V +T+++   +++ LF+  TA++
Sbjct: 16  LINYFWLVLVTISLRMIVWIMLFLTMTAES 45


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 108 FFIIFFYCL--DMGGLALSPPGVKWLLEPIDIYNVNVPPTLRYKLQGLNIQQLPCLSNRN 281
           FF++FF+C+   +  L LS     W +  +D +NV+VP  L   +  +    +       
Sbjct: 221 FFVLFFHCIFTFVQTLGLSNYACGW-INALDTFNVSVPIALLMLISAITF-TVALTGMVT 278

Query: 282 ALLLYGRNRQGAG 320
           AL+   R  +GAG
Sbjct: 279 ALVKVHRLYRGAG 291


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 108 FFIIFFYCL--DMGGLALSPPGVKWLLEPIDIYNVNVPPTLRYKLQGLNIQQLPCLSNRN 281
           FF++FF+C+   +  L LS     W +  +D +NV+VP  L   +  +    +       
Sbjct: 221 FFVLFFHCIFTFVQTLGLSNYACGW-INALDTFNVSVPIALLMLISAITF-TVALTGMVT 278

Query: 282 ALLLYGRNRQGAG 320
           AL+   R  +GAG
Sbjct: 279 ALVKVHRLYRGAG 291


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 LPVIMQIIINYVWIVRITVAVLCFIFMCLFIWET 453
           LP I    +     V I V + C IF+ LF+W+T
Sbjct: 769 LPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDT 802


>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
 Frame = +1

Query: 355 PVIMQIIINYVWIVRITVA-VLCFIFMCLFI--WETA------QNKQYVTNR---QTNKL 498
           P+++ II+    I+ +TVA +LCF++ C+++  W+T+      Q+K+    R   Q  KL
Sbjct: 109 PLLLGIILT---IIVVTVALILCFVY-CIYLWCWKTSELSIPKQDKKLEKVRRESQKKKL 164

Query: 499 PHGVRCQHQ 525
              VR QH+
Sbjct: 165 EESVRYQHE 173


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 406 VAVLCFIFMCLFIWE 450
           V VLCF F C FIW+
Sbjct: 199 VCVLCFAFNCWFIWK 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,857
Number of Sequences: 27780
Number of extensions: 364281
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)