Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2436
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    47   2e-06
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    39   5e-04
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    36   0.006
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.69 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   1.6  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    26   3.7  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   4.8  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 129 TMESPRKFND--CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRH 299
           T  SP+      C F+   TCT G NC+F H+      +T+C  +Q+G C    +C L H
Sbjct: 29  TRPSPKSLQHVPCKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEH 88

Query: 300 M 302
           +
Sbjct: 89  V 89


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 114 RIAKNTMESPRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCK 290
           R  K    SP      Y+     C KG  C F HEP+    +T+C  +  G+C   + C 
Sbjct: 195 RFLKEVGNSPSAVYCRYYNANGICGKGAACRFVHEPTR---KTICPKFLNGRCNKAEDCN 251

Query: 291 LRHMELRKNRKQIPCYWENQPGGCRKIHCPFMH 389
           L H EL  + ++IP       G C   +C ++H
Sbjct: 252 LSH-EL--DPRRIPACRYFLLGKCNNPNCRYVH 281


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +3

Query: 81  RLISVLKFARVRIAKNTMESP------RKFNDCYFYYYSTCTKGDNCVFRHEPSALGCET 242
           RL+   K A+  + KNT E+        +   C F+   TCT G+NC F H  S      
Sbjct: 15  RLLDQKKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPFSH--SLETERP 72

Query: 243 MCTAWQQGKCT-DKRCKLRH 299
           +C  + +G C    +C L H
Sbjct: 73  ICKYFLKGNCKFGPKCALSH 92


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 406 VLMELAPSQPAPPVHACLNESVVEQPPMGSHPAP 507
           +L EL P +P P      NE V E+P  G  P P
Sbjct: 93  LLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLP 126


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 300 CDVVYSVYQYISPVARLCTLFHSLRLTAHGETHNYLPLY 184
           C VVYSV     P+A    LF  L L  +   +  LP++
Sbjct: 841 CQVVYSVISAFEPIA----LFQGLLLVGYSTMYTMLPVF 875


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 159 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRHMELRKNRKQIPC 335
           C  +    C KG+ C F HE +           ++G C++ + C   H++   +++   C
Sbjct: 54  CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLD--PSKQVGVC 111

Query: 336 YWENQPGGC 362
            W N  G C
Sbjct: 112 AWYNM-GFC 119


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 35  VFQKLLFSINYFHE--LKVN*CFKICSSPDSEKYHGVST 145
           +F+K++F++ +FHE  L++   F      DS  YH V T
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCLL--DSGLYHQVFT 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,845
Number of Sequences: 5004
Number of extensions: 58088
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)