Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2436
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    38   0.004
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    38   0.004
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    38   0.007
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        33   0.16 
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    33   0.16 
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    33   0.16 
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    33   0.16 
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    28   5.9  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    27   7.7  
L14433-7|AAA27972.1|  469|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 141 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 317
           PR   DC ++    C+KG+ C F H+ +    E +C     GKC+  + C+  H   R +
Sbjct: 2   PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 141 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 317
           PR   DC ++    C+KG+ C F H+ +    E +C     GKC+  + C+  H   R +
Sbjct: 2   PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +3

Query: 159 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 338
           C  +    C KGD C F HE             +   C+++ C  RH++     K  P Y
Sbjct: 82  CKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWY 141

Query: 339 WENQPGGCRK-IHCPFMHK 392
                G CR   +C   H+
Sbjct: 142 ---DRGFCRHGPYCKHRHR 157



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 183 CTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRH-MELRKNRKQIPCYWENQPG 356
           C  G  C  RH         +C  W +G C    +C+  H  +L K  +   C++ ++  
Sbjct: 63  CPFGPTCPLRHIDGEKA--VVCKHWLRGLCKKGDQCEFLHEYDLTKMPE---CFFFSKYS 117

Query: 357 GCRKIHCPFMHKNPEAR 407
            C    CPF H +PE +
Sbjct: 118 ACSNRECPFRHIDPETK 134


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 272
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 272
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 256 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 287


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 272
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 252 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 283


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 272
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +3

Query: 159 CYFYYYSTCTKGDNCVFRHE-PSALGCETMCTAWQQGKC-TDKRCKLRHMELRKNRKQIP 332
           C F+    C  GDNC++ H+   +L    +C  +    C    +C + H E        P
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLHGE-------FP 223

Query: 333 CYWENQPGGCRKIHCPFMH 389
           C      G C    C F H
Sbjct: 224 CK-SFHKGQCNHDPCRFSH 241


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 351 PGGCRKI-HCPFMHKNPEARTDGIGSKSACPTCSCLPKREC 470
           PGGC  +  CP     PE        K+ C T SC P  EC
Sbjct: 31  PGGCGMVASCPDCEPGPECL-----EKNDCNTKSCAPTEEC 66


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 424 PSQPAPPVHACLNESVVEQPPMGSHPAP 507
           PS P PP +  + E     PP    PAP
Sbjct: 266 PSPPPPPANTTVTEEKTTVPPATDEPAP 293


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
            C37C3.6c protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
 Frame = +3

Query: 159  CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 338
            C F  Y  C  G +          GC   C   Q G C D + + R     +N++  PC 
Sbjct: 966  CEFAQYGCCPDGKSVA--KGAGFYGCPESCAQSQFGCCPDGKTRAR----GENKEGCPCQ 1019

Query: 339  WENQPGGCRKIHCPFMHKNPEARTDGIGSKS-ACPTC-----SCLPKRECGGAATDG 491
            +     GC    C      P+  T  +G ++  C  C      C P  E      DG
Sbjct: 1020 YTRY--GC----C------PDGETTALGPRNDGCDNCRYAKHGCCPDGETKALGPDG 1064


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
            C37C3.6a protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
 Frame = +3

Query: 159  CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 338
            C F  Y  C  G +          GC   C   Q G C D + + R     +N++  PC 
Sbjct: 966  CEFAQYGCCPDGKSVA--KGAGFYGCPESCAQSQFGCCPDGKTRAR----GENKEGCPCQ 1019

Query: 339  WENQPGGCRKIHCPFMHKNPEARTDGIGSKS-ACPTC-----SCLPKRECGGAATDG 491
            +     GC    C      P+  T  +G ++  C  C      C P  E      DG
Sbjct: 1020 YTRY--GC----C------PDGETTALGPRNDGCDNCRYAKHGCCPDGETKALGPDG 1064


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
 Frame = +3

Query: 159  CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 338
            C F  Y  C  G +          GC   C   Q G C D + + R     +N++  PC 
Sbjct: 966  CEFAQYGCCPDGKSVA--KGAGFYGCPESCAQSQFGCCPDGKTRAR----GENKEGCPCQ 1019

Query: 339  WENQPGGCRKIHCPFMHKNPEARTDGIGSKS-ACPTC-----SCLPKRECGGAATDG 491
            +     GC    C      P+  T  +G ++  C  C      C P  E      DG
Sbjct: 1020 YTRY--GC----C------PDGETTALGPRNDGCDNCRYAKHGCCPDGETKALGPDG 1064


>U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B3.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +3

Query: 171 YYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCYWENQ 350
           YY+  T+ D   FR EP  +  +   T W +        KL  +E  K  K + C   + 
Sbjct: 118 YYTNDTEKDFLDFRSEPRKIIPKKFSTCWVENLAVPADIKL-FVEFWKRAKFVNCMNLHI 176

Query: 351 PGGCRKIHCP 380
           P    K+  P
Sbjct: 177 PRAGSKVRMP 186


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 393 NPEARTDGIGSKSACPTCSCLPKRECGGAATDGEP 497
           N E    G G   AC +C   P    G   TDG P
Sbjct: 121 NEEVPVGGGGGGGACCSCGVGPPGPSGAPGTDGNP 155


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 159 CYFYYYSTCTKGDNCVFRHE 218
           C F+    C +G+ C +RHE
Sbjct: 168 CSFFVKGECKRGEECPYRHE 187


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 243 LFHSLRLTAHGETHN--YLPLYMWNSNK 166
           LF  LRL A  +T    Y PL +WN NK
Sbjct: 280 LFARLRLIAAEKTQQTMYTPLQLWNDNK 307


>L14433-7|AAA27972.1|  469|Caenorhabditis elegans Hypothetical
           protein C50C3.1 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 183 CTKGDNCVFRHE 218
           CT+GDNC F+H+
Sbjct: 387 CTRGDNCRFKHD 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,374
Number of Sequences: 27780
Number of extensions: 364931
Number of successful extensions: 1006
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)