Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2436
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 289 NYVTWSLGKIVNKFHATGRTNLVAAARFTAHSCIRTPR--HVLMELAPSQP 435
           NY  W  GKIVN       TN V     +A S  R  R  + L + AP QP
Sbjct: 144 NYYIWHPGKIVNG-KRVPPTNWVGVFGGSAWSW-REERQAYYLHQFAPEQP 192


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 26  YNFVFQKLLFSINYFHELKV 85
           YN  ++KL ++INY  ++ V
Sbjct: 344 YNNNYKKLYYNINYIEQIPV 363


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 289 NYVTWSLGKIVNKFHATGRTNLVAAARFTAHSCIRTPR--HVLMELAPSQP 435
           NY  W  GKIVN       TN V     +A S  R  R  + L + AP QP
Sbjct: 144 NYYIWHPGKIVNG-KRVPPTNWVGVFGGSAWSW-REERQAYYLHQFAPEQP 192


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 20  FEYNFVFQKLLFSINYFHELKV 85
           + YN   +KL ++INY  ++ +
Sbjct: 98  YNYNNNCKKLYYNINYIEQIPI 119


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 26  YNFVFQKLLFSINYFHELKV 85
           YN   +KL ++INY  ++ V
Sbjct: 101 YNNYNKKLYYNINYIEQIPV 120


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 96  LKFARVRIAKNTMESPRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQ 263
           LKF   +  K +++  +   +     Y +  K D C          C   CT +QQ
Sbjct: 118 LKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSNGEEVCLENCTGYQQ 173


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 26  YNFVFQKLLFSINYFHELKV 85
           YN   +KL ++INY  ++ V
Sbjct: 105 YNNNCKKLYYNINYIEQIPV 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,380
Number of Sequences: 438
Number of extensions: 4805
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)