Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2435
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.95 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   1.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   3.8  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.1  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   5.1  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   6.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.7  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 154 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 279
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 404 PPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVTLI-PKI 580
           P   S   +LPT +   S       +S   +  QT    RPP  SPT   +  T I P +
Sbjct: 138 PSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP--SPTSITTTSTSIDPSV 195

Query: 581 AVNTTS 598
           A ++ S
Sbjct: 196 AFSSKS 201


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 178 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 288
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 524 PPVRSPTLARSVVTLIPKIAVNTTSVSRALPAS 622
           P +RS +L  S V LIP +  +  + S + PAS
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPAS 471


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -1

Query: 579 IFGMSVTTERASVGDLT-GGRAAESV--CYFFVFALRNLIS 466
           +FG  VTTE + + DLT   RA + V   Y + FA +NL++
Sbjct: 213 LFGSKVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVT 253


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 280 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 185
           RC+G +S  +  I++ WR   D YR  SV L R
Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 352 FPDENKCDVFWNCW 393
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,865
Number of Sequences: 5004
Number of extensions: 49190
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)