Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2435
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0589 + 20850249-20850491,20850583-20851839 31 0.74
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 31 0.74
09_06_0280 + 22010270-22011407,22011890-22013097 30 1.7
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.0
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 29 3.0
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.0
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 4.0
03_05_1129 - 30595580-30595771,30596119-30597162 28 5.2
02_02_0183 + 7576901-7576908,7577666-7578176 28 6.9
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253... 27 9.2
06_03_0915 - 25929433-25930893 27 9.2
02_05_0730 + 31284936-31285085,31285228-31285452,31287058-312872... 27 9.2
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 304 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 167
A SSL T S S R ++ +WR+ R+ +R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 31.1 bits (67), Expect = 0.74
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = -1
Query: 447 LSVVGKSGAALIAGGFSVPAVPEDVALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKV 268
+ V+ S A I + PA+ L ++ D+V ++ +GSG GL + L+ V
Sbjct: 200 IMVMTCSFAYYIVPSYLFPAISTISVLCWLYRDSVTAQQIGSGASGLGVGSF-GLDWNTV 258
Query: 267 VAVLGQVFGICGVESETVTAGFQFGYTVVALPVFVTGD 154
V LG V AGF T VA+P+ D
Sbjct: 259 VGFLGNPLASPAFAIFNVMAGFALS-TYVAVPILYWTD 295
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 490 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYIC 600
N + AN + CP PGE + S +++ ++ R Y+C
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVC 315
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 283 ECGERTQLEPPISTPHCSRLYGIF 354
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
Length = 250
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 325 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 230
+WR R LR+QRC EG RS + +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 289 RTQRCEGSRSSRSSIWNLWRRKRDR 215
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 388 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 567
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 568 HPE 576
E
Sbjct: 129 DYE 131
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 446 SPASACGLIRFRSAKTKK*QTDSA-ARPPVRSPTLARSVVTLIPK-IAVNTTSVSRALPA 619
SP+ A L R + T + + A A PP S AR VVTL P+ +A T+ + A P+
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPS 234
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Frame = -3
Query: 469 QPTCRRGTLCRRQVRGCTDSGXXXXXXXXXXXRTCFHQGRCRTVSNSGEWRL-------- 314
+P +RG RR+ R C G C +G G +
Sbjct: 48 RPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARCDRRGGAEAEGGDGTGDVEAEGGGGG 107
Query: 313 GARAVSSLRTQRCEGSRSSRSSIWNLWRRKR 221
G V + +R EG S + W WRR+R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR 138
>10_01_0001 -
22485-22526,23308-23436,24346-24473,24801-24862,
25388-25585,25807-25898,26941-26994
Length = 234
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 172 WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLEPPIS 321
W C G E CG + A ++ + C Y + CG +L+PP S
Sbjct: 9 WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSS 58
>06_03_0915 - 25929433-25930893
Length = 486
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 372 ALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKVVAVLGQVFGI 238
AL+ +R D + +++G G+ L + L VV ++ V+G V+ +
Sbjct: 438 ALIALRLDK-EGKSLGKGERLLSIVMLGLAMVVSIIGVIGNVYSL 481
>02_05_0730 +
31284936-31285085,31285228-31285452,31287058-31287252,
31287357-31287418,31287768-31288032
Length = 298
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 606 LETDVVFTAIF-GMSVTTERASVGDLTGGRAAESVCYFFVFA 484
+E V F +F ++V T+ +VG+L G +VC +FA
Sbjct: 169 VEVIVTFNMMFVTLAVATDTRAVGELAGLAVGSAVCITSIFA 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,627
Number of Sequences: 37544
Number of extensions: 400069
Number of successful extensions: 1374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -