Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2434
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.32 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.42 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   1.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   3.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   4.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   5.2  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   6.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.9  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   6.9  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   9.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   9.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.1  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   9.1  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = +1

Query: 163 LMAMKPPMDP-----SRSRLNRKQVM*RANMDTRTTLASYE*LSTAPTNTDSSQPARASP 327
           LM+  P ++P     S+S L+ K     A M +  + ++   +S+  + T S  P+++  
Sbjct: 51  LMSAFPGLEPHVFQHSQSPLSHKDASLLATMPSVAS-SNPSLISSGSSQTGS--PSQSLS 107

Query: 328 LRLQPSSTSRPGTRDSDPGSRREVDHSTEPRLHNQTMTTRNP 453
              +PSS     + DS   +      S  P ++N + T+RNP
Sbjct: 108 SNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNP 149


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 277 STAPTNTDSSQPARASPLRLQPSSTSRPGTRDSDPGSRREVDHSTEPR--LHNQTMTTRN 450
           +T+P  + SS P    P   QP+S     T    P S +    S  P   LH    +T N
Sbjct: 229 TTSPIFSSSSTPPPPPPRPSQPTSGESQNTNPRFPFSAQSFVFSVGPNGALHQVNTSTEN 288

Query: 451 PR 456
           P+
Sbjct: 289 PQ 290


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 385 FPGLSPSSLVDSSTRVGGATVMPSPAGWNPYLLAPYSITRSLPVSSLYPYLPF 227
           FPG+    +++     GGA ++P P      + +P     ++P + + P +PF
Sbjct: 268 FPGMPAMPMMNVPMGPGGAPLVPPPPP-GMVMASPSPAAATIPGAPVMPNIPF 319


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 286 PTNTDSSQPAR--ASPLRLQPSSTSRPGTRDS 375
           P+ +  SQP +  A P R  PS  SRPG+R S
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPS 131


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 274 LSTAPTNTDSSQPARASPLRLQ--PSSTSRPGTRDSDPGSRREVDHS 408
           LS  P++  SS   +ASP  L+  P   S   T  S+  SRR   H+
Sbjct: 110 LSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHN 156


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 250 TTLASYE*LSTAPTNTDSSQPARASPLRLQPSSTS 354
           +T A+Y   +T P NT +   AR+S L   PSS+S
Sbjct: 341 STSANYS--NTPPRNTVTPSTARSSTLSQNPSSSS 373


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 283 APTNTDSSQPARASPLRLQPSSTSRPGTRDSDPGSRREVDHSTEPRLHN-QTMTTRNPRL 459
           AP+N        A+P    P S     T   + G    V +S +P LH     + RNP L
Sbjct: 324 APSNAQFRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNSAQPLLHEINFASNRNPHL 383


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 277 STAPTNT-DSSQPARASPLRLQPSSTSRPGT 366
           S+ PT T DSS    ++P+ L  SSTS  G+
Sbjct: 261 SSVPTQTIDSSSFTSSTPVSLTSSSTSSSGS 291


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  KIGVSSIHRVCGGPVQ*GPRPSIH 82
           ++GV  + +V GG V  G RPS H
Sbjct: 69  QVGVGRLCKVYGGSVNRGMRPSHH 92


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 304 WNPYLLAPYSI--TRSLPVSSLYPYL 233
           WN   L  Y    T SLPVSSL+P L
Sbjct: 39  WNENRLYDYGSKSTMSLPVSSLFPAL 64


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  KIGVSSIHRVCGGPVQ*GPRPSIH 82
           ++GV  + +V GG V  G RPS H
Sbjct: 69  QVGVGRLCKVYGGSVNRGMRPSHH 92


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 288 NKYGFQPAGEGITVAPPTLVDESTRDEGLRP 380
           N YG    G  +T +P   +DE T  E   P
Sbjct: 2   NNYGVSSIGTSLTPSPTGSIDEYTSKEVKHP 32


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 343 SSTSRPGTRDSDPGSRREVDHSTEPRLHNQTMTTRN 450
           S  +RP  + S   S+ E+D+    ++H Q++  +N
Sbjct: 70  SKKTRPKKKGSKKSSKSELDNEENLKVHIQSLRYKN 105


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 248 LVSIFALHITCLRFSLDLEGSIGGFIAISVGAVFVVSVYLFQYGHRRGDFF 96
           L+S+  L+I  +       G + GF+ +S G +  V++ +FQ+  +  DFF
Sbjct: 177 LLSLVLLYIASISLGRIYCG-MHGFMDVSTGTILGVTLAIFQW--KYADFF 224


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 454 RLHRPRDPVPNRNHNPS 504
           RLH+   P+PN N N S
Sbjct: 240 RLHQSPSPIPNSNDNDS 256


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 463 RPRDPVPN--RNHNPSTGPPP 519
           R   P PN  R+  P+TGPPP
Sbjct: 7   RAVQPPPNDSRSSTPATGPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,025
Number of Sequences: 5004
Number of extensions: 42366
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)