Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2431
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   1.9  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   3.3  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 45  KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKTFDKVWHNGLI 224
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 225 F 227
           F
Sbjct: 346 F 346


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 479 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDF 610
           +P REE S + P  +  V      + PS+K  G +S  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 311 DSISKRAVRQEVPYDEHETIRHTHVE*FENQTVVPDFVERFCDVEEESS 165
           +S+   +  + VP  +HE I     +  E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 146 TKTVIHGSSLLRRRKNVRQSLAQ 214
           T T+++GS ++  R+N+R+ + Q
Sbjct: 234 TGTIVYGSCMISVRRNIREEVVQ 256


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 595  APHGFPPVLGGGISHPPITLFSQSIP 672
            AP G PPV    ++ PP+   S  IP
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIP 1179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,890
Number of Sequences: 5004
Number of extensions: 62619
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)