Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2428
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    28   1.0  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   5.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.6  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   9.6  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 96  INQFDENGDRCLRVLKAPRVNPENPTRHV 10
           ++ FD N D+ + V K P++NP   T+ V
Sbjct: 222 LSDFDSNYDKLVFVAKDPKLNPATQTKTV 250


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 479 VFFFFFYNA*MGERAHSPPYVKWLPEPI 396
           ++F+ F  A      H PPY+   P P+
Sbjct: 244 IYFWDFARAIWAHAGHVPPYIIKFPRPV 271


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 245 SQEVLPPVMNTSPNKSNSSQNLPPDRNH 162
           S E LP     S   SN   +LP D NH
Sbjct: 319 SNERLPLFAEKSETNSNGEASLPSDVNH 346


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 84  DENGDRCLRVLKAPRVNPENPTRHVSGD 1
           +E     LR+L  PR NPE     +S D
Sbjct: 144 EEKQRHVLRLLVGPRYNPEEDLVRISSD 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,718
Number of Sequences: 5004
Number of extensions: 38035
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)