Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2427
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   2.5  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   4.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   4.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   5.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   5.7  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   7.5  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   9.9  

>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 253 NARCRYSNGGTCSTNKTDEDGCEVRDIYAI 342
           NA      GGTC   + + D C+  D Y +
Sbjct: 64  NATILVDTGGTCECTEANRDDCDKLDDYVL 93


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 343 VSHRYHGLHIHLRQFYWLNRSLRY 272
           + HRY   H  LRQFY    +LRY
Sbjct: 221 LKHRYKSQHHRLRQFYADCSNLRY 244


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 188 AATITTPETMVVSRSDDAETEATLDVD 268
           A T+T P T + S  +DAE++A L  D
Sbjct: 23  AGTVTKPVTKMSSYIEDAESDAELPQD 49


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = +1

Query: 238 CGN*SNARCRYSNGGTCSTNKTDEDGCEVRDIYAI---RSHGYCSACAKCC 381
           CG+    +C   + GTCS   T    C   ++        +G+   C + C
Sbjct: 485 CGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQNGFIPTCERLC 535


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 349 HGYCSACAKCCKQISRSQ 402
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 127 HCYCFAYFQWNDLFNWFS 74
           H YCF    W +L+ W +
Sbjct: 413 HIYCFKITSWVNLYGWIT 430


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 233 DDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMR-YAHTAIVAH 367
           DD++TE TL VD +++G      +      SV ++R YA  A + H
Sbjct: 51  DDSDTEGTLFVDPLSDGDACSRDVPYFQELSVNAIRVYAVNASLDH 96


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 272 VTEGPVQPIKLTKMDVKSVISMRYAHTAIVAHVRNAANKSQEANF 406
           + EG   PI     D+K      +  T I    R   +K+  +NF
Sbjct: 321 IAEGRSNPITKCAFDIKDSSMQSFTKTTITISKRKGISKTDISNF 365


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 154 IREHWSPVCGTCC--HNYDPRD 213
           ++++WSPV   CC  H ++  D
Sbjct: 78  LKKYWSPVFNACCAFHYFEGND 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,199
Number of Sequences: 5004
Number of extensions: 41146
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)