Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2425
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              104   4e-23
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)                   29   1.4  
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)                29   2.5  
SB_5785| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  27   10.0 

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  104 bits (249), Expect = 4e-23
 Identities = 53/85 (62%), Positives = 61/85 (71%)
 Frame = -2

Query: 458 GEPVFGEAHIFASFNDTLVHVTNLPARETIAGVTGGMKVKPARNKASPYAVMLPAQNVPE 279
           GE VFG AHIFASFNDT VHVT+L  RETI+ VTGGMKVK  R++ASPYA ML AQ+V  
Sbjct: 195 GELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAA 254

Query: 278 KCKTLGITALAHKAPCYW*KQNKDP 204
           +CK +GITAL  K       + K P
Sbjct: 255 RCKEIGITALHIKLRATGGNKTKTP 279



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 250 LHIKLRATGENKTKTPGP 197
           LHIKLRATG NKTKTPGP
Sbjct: 264 LHIKLRATGGNKTKTPGP 281


>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
          Length = 924

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 135 LQCGQSSYLNEQEPEVQTEHQGPGVFVLFSPVARSFMC-KGRYAK 266
           LQ G  S + EQ      +H+ P +   + P  R + C +G YAK
Sbjct: 154 LQTGSVSVVPEQIEAQNPDHEVPVIAAAYRPSKRCYFCGEGHYAK 198


>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
          Length = 592

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 162 NEQEPEVQTEHQGPGVFVLFSPVARSFMCKGRY---AKSFAFFWYILCRQHNSVGGRFIT 332
           N Q  EVQ+ H      V   PV   +  +G+Y    KSFAF    L   HN+     I 
Sbjct: 253 NCQSCEVQSAHWNGPTMVSLHPVVVYYKAEGKYDLEHKSFAFVSEEL--SHNAAAVYAIL 310

Query: 333 GRL 341
           GRL
Sbjct: 311 GRL 313


>SB_5785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 207 VFVLFSPVARSFMCKGRYAKSFAFF 281
           V  LFSPVAR F C  R+  S  FF
Sbjct: 38  VMGLFSPVARFFGCAIRFLDSAIFF 62


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 298 RHRMYQKNAKLLA*RPLHIKLRATGEN 218
           R +M ++ AKLL+  P H KLR  G +
Sbjct: 95  RRKMRERMAKLLSKTPRHSKLRGDGSS 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,244
Number of Sequences: 59808
Number of extensions: 316153
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)