Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2423
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   1.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   5.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.3  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 341 ARRRIRVNENKSFSCWTETCFCLMSVTDTNTTREREKSMLKHRRY*VY 198
           A R++   ENK+   W ET   L  + D N    R   +L  R Y  Y
Sbjct: 558 AARKVEKEENKNEVIWNETKNDLGRIKDLNLRAGRLAQLLNTRTYDPY 605


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 6    VFLPLVNGAI*ILVLLSRFYYFLSKILGASKILHSFRGHGKL 131
            + +PL+ G + + +   +FY+      G SK    FR H  L
Sbjct: 1076 LIVPLLTGVLAVYIFKKKFYHVKFNAFGTSKQNLHFRQHDVL 1117


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 163 STTGLFYKLIVKYTQ*RLCFNI 228
           ST+G F K    YT+ ++C+N+
Sbjct: 38  STSGFFNKRFQNYTKRQICYNV 59


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 300  RK*FVFINSDSSSCFYPTMWDWPVK 374
            RK F  IN +S  C+Y  ++ W  K
Sbjct: 1005 RKAFQMINVESQPCWYNILFSWRYK 1029


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = +3

Query: 309 FVFINSDSSSCFYPTMWD---WPVKSSVLFRPIIRHLCVYILLSHFFHY--LHGKMRHPP 473
           F   N  S SC  PT WD    P+ ++     I   +C   L   F HY  +     HPP
Sbjct: 222 FQLSNGSSYSCNAPTFWDVTGLPINNTEDLNSISEVMC---LSGDFDHYGDVEAFGNHPP 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,399
Number of Sequences: 5004
Number of extensions: 50539
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)