Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2423
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0979 + 33268294-33269595                                         29   3.3  
07_03_0976 + 23061633-23061686,23062783-23063564,23065468-230657...    28   7.6  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    28   7.6  

>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 366 PVKSSVLFRPIIRHLCVYILLSHFF---HYLHGKMR--HPP 473
           PVKS + FR + R     I  SH F   H+L  K R  HPP
Sbjct: 34  PVKSLLRFRCVSRRFHATITSSHLFQEAHFLQRKQRNKHPP 74


>07_03_0976 +
           23061633-23061686,23062783-23063564,23065468-23065717,
           23065808-23065984
          Length = 420

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 69  FLSKILGASKILHSFRGHGKLKCCSTAFEYC 161
           F+   LG + I   FR HG LK C+   E C
Sbjct: 256 FVQTFLGGNYIALHFRRHGFLKFCNVKKESC 286


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 102 LHSFRGHGKLKCCSTAFEYCVNYRLIL*INSKIHSITPMFQHR--FFSFSC 248
           +HS R +   KCC    +Y     +I  +N + ++I P+ +    F  F C
Sbjct: 86  IHSMRSNLTRKCCLWRHKYIATIVVIWLVNWQCYNIAPVAEKEKIFVDFGC 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,352
Number of Sequences: 37544
Number of extensions: 317559
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)