Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2423
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.5  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   6.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 374 VLCPIQAYHTSSLRVHPSFTLLSLSTR*NAPPTLRYE 484
           V+C +       L  HP+ T  S     NA PT  +E
Sbjct: 165 VVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHE 201


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 304 FLVGLKLVSV*CQLPIRIQQEKE 236
           F +GL+ V   C++   I Q+KE
Sbjct: 22  FQIGLRAVVPICRIETSIDQQKE 44


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 598 LVSPHG*VPPPCLLKP 551
           L S  G +P PC+LKP
Sbjct: 28  LPSWDGKMPQPCILKP 43


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 267 SYRYEYNKRKRKIY 226
           +Y+Y YN   +K+Y
Sbjct: 328 NYKYNYNNYNKKLY 341


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 540 LLLHGFNRQGGGTYPCGLTR 599
           L L+G NR+  G Y C + R
Sbjct: 384 LRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 540 LLLHGFNRQGGGTYPCGLTR 599
           L L+G NR+  G Y C + R
Sbjct: 384 LRLNGINREDRGMYQCIVRR 403


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 267 SYRYEYNKRKRKIY 226
           +Y+Y YN   +K+Y
Sbjct: 95  NYKYNYNNNCKKLY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,202
Number of Sequences: 438
Number of extensions: 3665
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)