Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2421
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   4.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.2  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   5.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.4  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 493 TFQLRFYSIIFIWNSSFAAIFI 428
           +F   FY +IFIW   FA +F+
Sbjct: 298 SFLFSFYVLIFIWVRLFARLFL 319


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 44  AYSPPDVKWLLEPIDIYNVDAPPTLR 121
           A  PP +K    P+DI N+DA   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 665 QCPCNKNILMSNTN*NKEIPENTNVARDVISDRLFEN*LNVASDLTRGN 519
           Q  CN N +   T  NK+  E TN  ++   D L+ N L   + +T  N
Sbjct: 575 QTVCNNNFITPKTVHNKQAAETTN-DQNKDKDLLYLNLLPYINSITERN 622


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 547 MLPRTLPGATATNERAQNTFQLRFYSIIFIWNSSFAAIFISQCFFL*ILFACFELLK 377
           + P  LP   ATN   +  F +  +S +   N  +A +F+S  FF   +F  +  L+
Sbjct: 107 LFPILLP-VNATNGVGEKGFDILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,580
Number of Sequences: 5004
Number of extensions: 50745
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)