Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2419
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.8
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 4.2
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.4
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 25 7.4
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 9.7
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 25 9.7
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 9.7
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 25 9.7
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 9.7
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 105 SNVK-HTDGAIQNDENDLHNQEAPQSQKVGGIFAF 206
S++K T ++N+EN+L ++ P VG +F F
Sbjct: 1637 SSIKLSTKEGLENEENELKDKAPPNEPNVGSLFLF 1671
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 15 STTPSMKQTQNSLPSYLSNLAPGFAMDPT--QSNVKHTDGAIQNDENDL 155
++TP T++S P + PGF D T QSN D E DL
Sbjct: 1216 TSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELEEDL 1264
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 447 PRSVNHNVTCVMQELGYVDDNMEPNFEHIRARIGSLPVSDELKG 578
PRS+++N + L DN ++ +R SLP+ D +KG
Sbjct: 375 PRSLSYNPAEKVALLTSSADNGVYELVNVSSRSNSLPLKDNIKG 418
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 213 QGVPFPQPGMSPFMMPAGPQFRP 281
QG P P P PFMMP PQ P
Sbjct: 419 QGFPAPFP---PFMMPGLPQMPP 438
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 174 QSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGP 269
Q+Q G +F PQ F QP + +MP P
Sbjct: 194 QTQPFGAAPSFAPQPTGFVQPQQTGVVMPPQP 225
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +1
Query: 67 VTWRLASLWIRRSPTSSTQMALYKMMKTIYTIKK 168
+ W W R S+ ++ Y M T++++K+
Sbjct: 211 IMWMAEDYWRRHKVRSNIDVSFYTGMPTLFSVKR 244
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 256 CRPGRSSARITRPCSSCLTRAT 321
CR + RPCS+CL R+T
Sbjct: 26 CRRKKLKCDHGRPCSNCLKRST 47
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 271 CGPAGIMNGDIPGWGNGT 218
C PA MN D WG+ T
Sbjct: 248 CAPARDMNADYHSWGHST 265
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 3 YSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQE 167
YSK ++ P ++ S + PGFA +++ H + N +D H +E
Sbjct: 678 YSKTASRPQFSDISSTASSNSLSNKPGFAHSESRNYHTHDE---DNSSDDNHKRE 729
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 24 PSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAI 134
P + + ++ YLS +APG + DP + +H D I
Sbjct: 2 PDLSLYKQTVDLYLS-IAPGHSRDPLNAIQEHMDSMI 37
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 174 QSQKVGGIFAFRPQGVPFPQPG-MSPFM 254
Q Q + F F+P P QPG + PFM
Sbjct: 209 QQQPLSSAFPFQPVKQPTEQPGSLHPFM 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,942
Number of Sequences: 5004
Number of extensions: 45837
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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