Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2419
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 36 0.029
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 30 1.4
03_06_0715 + 35693002-35694585 29 2.5
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.3
02_02_0240 + 8196140-8198248,8198381-8198650 29 3.3
04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657 29 4.4
06_01_0176 + 1377184-1377444,1377778-1378368 28 5.8
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 28 5.8
01_01_1063 - 8386813-8387236,8387322-8387779 28 5.8
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 28 7.6
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +3
Query: 63 LSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQPGM 242
++N PG +++ TQ+ V T ++ D + + PQ G F FRP GVPF Q
Sbjct: 1268 MTNFIPGGSVN-TQAAVNFTP-SVPPDYGNNNLYIKPQGSN--GNFQFRPTGVPFQQGTF 1323
Query: 243 SPFMMPAGPQFRPY 284
S F P RP+
Sbjct: 1324 SAFPSAQTPPVRPH 1337
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 189 GGIFAFRP-QGVPFPQPGMSPFMMPAGPQF-RPYNPAM 296
GG +RP G +P PGM+P P PQ+ RP PA+
Sbjct: 35 GGAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAV 72
>03_06_0715 + 35693002-35694585
Length = 527
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 AMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQPGM-SPFMMPA 263
A DPT ++ DGA D + H+ +A Q G F + P PG+ SP M
Sbjct: 50 AADPTSRAIRFGDGAEYVDPDPGHSMQAIYEQVYGTPFV-DARATPITPPGVPSPPMAGF 108
Query: 264 GPQFRPYNPAM 296
Q P M
Sbjct: 109 AQQAEKEKPGM 119
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 48 SLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVG-GIFAFRPQG 218
S+ L + PG A T N D +Q DE+ + + A + G + F QG
Sbjct: 1695 SIGQILGDAKPGSASSKTTKNTPEVDSGLQQDEDRIQSTNASSTLAAGEDVRRFSEQG 1752
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 171 PQSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGPQFRPYN 287
PQ ++ G P +P P PG +P+ MP P RPY+
Sbjct: 603 PQVIRMPGSMGPMPTNIPPPPPGQNPY-MPGPP--RPYS 638
>04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657
Length = 357
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 145 KTIYTIKKLRNHRKSAGYSLFDLKGFHSPSPECRHS*CRPGRSSAR 282
+T I L HR + GYSL DLKG SP+ H P + +R
Sbjct: 253 ETARLIAVLEKHRAAFGYSLQDLKGI-SPTLCTHHIPLEPSCTPSR 297
>06_01_0176 + 1377184-1377444,1377778-1378368
Length = 283
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 151 IYTIKKLRNHRKSAGYSLFDLKG 219
++ + K ++H+KSAGYS +L G
Sbjct: 219 VWKLLKEKDHKKSAGYSFIELDG 241
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 386 RRGQSDVSPNRSSNSTGTPRAALRESQRDLRDAGIRIRGR 505
RRG D S S+ + A R+ R L+ AGIR+R R
Sbjct: 120 RRGGRDSSAAASAPPSAAELALPRDELRRLQGAGIRLRNR 159
>01_01_1063 - 8386813-8387236,8387322-8387779
Length = 293
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 228 PQPGMSPFMMPAGPQFRPYNP 290
P PGM P MP GP P+ P
Sbjct: 235 PHPGMPPPPMPYGPHPHPHQP 255
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = +3
Query: 66 SNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQPGMS 245
+N PG AM P+Q V N + P Q P P P PG
Sbjct: 545 NNQQPG-AMQPSQPAVTQMQSGFANQFGSMPPHSMPGMQF--------PGMQPSPMPGAQ 595
Query: 246 PFMMPAGPQFRP 281
P MM A P P
Sbjct: 596 PVMMYAQPMMMP 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,775
Number of Sequences: 37544
Number of extensions: 362565
Number of successful extensions: 1161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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