Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2419
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 32 0.42
Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical p... 31 0.96
AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical ... 31 0.96
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z46794-5|CAA86784.1| 381|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 28 5.1
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 28 5.1
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 28 5.1
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 28 5.1
AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical... 28 6.8
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 6.8
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 114 KHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGP 269
K DG+ + + +Q+AP S K FA P G P P P + PA P
Sbjct: 117 KKPDGSEKKTQTQTEDQKAPDSPKKDDFFA--PPGAPDPVPAVPVEPSPAPP 166
>Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 441 HAPRSVNHNVTCVMQELGYVDDNMEPNFEHI 533
HA N ++EL YVDD++E N EH+
Sbjct: 138 HAHDQYNKKGLRALEELEYVDDDIETNLEHL 168
>AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 441 HAPRSVNHNVTCVMQELGYVDDNMEPNFEHI 533
HA N ++EL YVDD++E N EH+
Sbjct: 138 HAHDQYNKKGLRALEELEYVDDDIETNLEHL 168
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 73 WRLASLWIRRSPTSSTQMALYKMMKTIYTIKKLRNHRKSAGYSLFDLKG 219
WRLAS+ + +PT M+L T TIK+L K+ + L G
Sbjct: 248 WRLASMMLGVAPTCCICMSLLARQMTSTTIKELIGVGKAGSIAEESLMG 296
>Z46794-5|CAA86784.1| 381|Caenorhabditis elegans Hypothetical
protein R06F6.5b protein.
Length = 381
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 444 APRSVNHNVTCVMQELGYVDDNMEPNFEHI--RARIGSLPVSDELKGDIQEGLQFCQK 611
A +SVNHN V+ D N N I R+ +G P++ + + +I +G +K
Sbjct: 308 ADQSVNHNENSVLNSSNVFDANNSLNSSRISVRSGVGMRPLAADQRTNILQGTPSVRK 365
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 73 WRLASLWIRRSPTSSTQMALYKMMKTIYTIKKLRNHRKSAGYSLFDLKG 219
WRLAS+ + +PT M+L T TIK+L K+ + L G
Sbjct: 248 WRLASMMLGVAPTCCICMSLLARQMTSTTIKELIGVGKAGSIAEESLMG 296
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 210 PQGVPFPQPGMSPFMMPAGPQFRPYNPAM 296
P G P PG PF P+ PQ P AM
Sbjct: 447 PGGYPMSAPGKMPFGSPSFPQSAPSPAAM 475
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 213 QGVPFPQPGMSPFM-MPAGPQFRPYNPAM 296
QG+P PGM MP GP P NPA+
Sbjct: 616 QGMPPMHPGMQGMPGMPHGPPQPPQNPAL 644
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 580 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 485
SP S+S T P A + +GS + STYP S
Sbjct: 17 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 48
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 580 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 485
SP S+S T P A + +GS + STYP S
Sbjct: 122 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 153
>AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical
protein Y116A8C.33 protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 483 QELGYVDDN--MEPNFEHIRARIGSLPVSDELKGDIQEGLQFCQKFSQCV 626
+EL + N + FEH++ + S+P+ E D+ + L+ C + V
Sbjct: 334 EELAAISGNSLISDGFEHLKNLLSSVPLDIENSADVLKKLEACYRLHPAV 383
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 308 RQLEHGRVIRAELRPGRHHEWRHSGLGEWNPLRSKSE 198
R+LE R+I EL+ G+H E H W+ ++++E
Sbjct: 96 RELERQRIIEEELKSGKHDE--HDDDPVWSMKKAQAE 130
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 42 QNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKV 188
+N L SYL G D +S + + +DEN +E P ++K+
Sbjct: 569 KNLLESYLKLHGAGAQQDSEESEISSAEEEASDDENS--GEEEPNTEKI 615
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 156 HNQEAPQSQKVGGIFAFRPQGV----PFPQPGMSPFMMPAGPQFRPY 284
H Q+ PQ + PQGV FP M+ MMPA P F PY
Sbjct: 555 HQQQQPQQPQQRIAAPGVPQGVHPQMQFPMNAMN--MMPAYPPFYPY 599
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 219 VPFPQPGMSPFMMPAGPQFRPYNPAMF 299
VP P PG P PQ RP P MF
Sbjct: 150 VPGPSPGGPQPPGPGQPQMRPGQPGMF 176
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 219 VPFPQPGMSPFMMPAGPQFRPYNPAMF 299
VP P PG P PQ RP P MF
Sbjct: 150 VPGPSPGGPQPPGPGQPQMRPGQPGMF 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,462
Number of Sequences: 27780
Number of extensions: 283926
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -