Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2418
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 0.74
06_01_1164 + 9921555-9922661 31 0.98
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 31 0.98
12_02_0640 - 21447470-21448309 30 1.7
12_02_0635 - 21430245-21431156 30 1.7
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 1.7
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 30 1.7
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 29 2.3
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 4.0
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091... 29 4.0
05_03_0296 - 11875922-11876378,11876705-11877045 28 5.2
04_03_0443 + 15999984-16000895,16002402-16003025 28 5.2
09_01_0037 - 604001-604957 28 6.9
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 28 6.9
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 28 6.9
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 28 6.9
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 28 6.9
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319 27 9.2
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 9.2
04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940 27 9.2
01_06_1437 - 37358912-37359226 27 9.2
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPG--RLRALSSPHPTPRLKGGSPASQIVCYWAMVRGSYRAASRG 79
P P PP APP +LR +SP P P G P + +V A R A++ G
Sbjct: 31 PHPPPPPPLEPAPPSTPQLRGEASPPPPPPPPVGPPGAAVVA--AAARKEASASAEG 85
>06_01_1164 + 9921555-9922661
Length = 368
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +2
Query: 155 FRRGVG*GELRARSRPGGAVPHGGVRGAR 241
+RRGV G R +R GGA GGVRGAR
Sbjct: 316 YRRGVRLGR-RVVARSGGAPATGGVRGAR 343
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 237 APRTPPCGTAPPGRLRALSSPHPTPRL 157
AP +PP P GR R L+SP+P+P L
Sbjct: 61 APPSPPLAEDPAGR-RTLASPYPSPGL 86
>12_02_0640 - 21447470-21448309
Length = 279
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGSPAS 136
P++ R PP T PP R + S P PR P S
Sbjct: 201 PQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGS 236
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGSPAS 136
P++ R PP T PP R + S P PR P S
Sbjct: 198 PQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGS 233
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTP 163
PR PR PP +A ALS P P P
Sbjct: 899 PRVPRPPPAPSATANTASALSPPPPRP 925
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTP-RLKGGSPASQIVCYWA-MVRGSYRAASRGV 76
P PR P P RAL+ HP R GGS AS+ C A + G R + G+
Sbjct: 102 PAPPRWPAVTQVPDEPYRALTPVHPARCRGDGGSGASEAPCPVAVLTTGQNRRLTEGL 159
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 345 CGEHHRALAPLMACALCRRRITKHHNV 425
C H R L+PL A CRR+ HH V
Sbjct: 362 CLSHPRLLSPLPLPAPCRRQTPHHHQV 388
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGSP 142
PR PR PP +A AL P P PR G P
Sbjct: 594 PRVPRPPPAPSATANTASAL--PPPPPRPPGAPP 625
>01_06_1312 -
36205549-36206649,36207558-36207883,36209083-36209198,
36210472-36211577
Length = 882
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 164 GVG*GELRARSRPGGAVPHGGVRGARGPLHTEEVAHQNE 280
G G E A GAV HG VRG H E H +E
Sbjct: 404 GHGHDEQAASLAAAGAVSHGDVRGGERERHEEHGLHGDE 442
>05_03_0296 - 11875922-11876378,11876705-11877045
Length = 265
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 96 RAASRGVAYDTRGSWLAGRRACSKRRI 16
R+A+ VA D R W AG ACS+RR+
Sbjct: 103 RSAATMVAADLR-RWSAGNTACSRRRL 128
>04_03_0443 + 15999984-16000895,16002402-16003025
Length = 511
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 321 PGLHTIPLCGEHHRALAPLMACALCRRRITKHHNVHFIHHGFQELNPILRES 476
PG T+PL G H ++ + RR+ + H + F E+ ++ S
Sbjct: 36 PGPWTLPLIGSIHHVVSSRESVHSAMRRLARRHGAPLMQLWFGEVGTVVASS 87
>09_01_0037 - 604001-604957
Length = 318
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -3
Query: 234 PRTPPCGTAPPGRLRALSSPHPTPRLKGGSPASQIVCYWAMVRGSYRAASRG-VAYDTRG 58
P TP C P ++ P P PR A + M+R R G A D R
Sbjct: 240 PPTPSCVRQEPPQMPFQLQPPPPPRPSAPFSAEFLAMMQEMIRIEVRNYMSGSAAVDPRS 299
Query: 57 SWLAGRRACSK 25
S G RA S+
Sbjct: 300 SPDNGVRAASR 310
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGS 145
PR+PR PP R L P PT L G+
Sbjct: 300 PRSPRRSSSPAPPPSPRRILRRPRPTLELVAGA 332
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -3
Query: 327 APGSRTSASALC*HCXXXXXXXXXXXSGPRAPRTPPCGTAPPGRLRALSSPHPTPRLKGG 148
A GS T +S+ PR P +PP +PP + +P P+P L+
Sbjct: 443 AVGSSTPSSSQARTAAAPAPPSPPEPPSPRDPASPPSLRSPPRQ----PTPPPSPSLQPA 498
Query: 147 SPASQIV 127
PA Q V
Sbjct: 499 FPAPQPV 505
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 234 PRTPPCGTAPPGRLRALSSPHPTPR 160
P+ PP T+PP A +SP P PR
Sbjct: 6 PQRPPA-TSPPAPAAAAASPQPLPR 29
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = -3
Query: 336 WCAAPGSRTSASALC*HCXXXXXXXXXXXSGPRAPRT--PPCGT--APPGRLRALSSPHP 169
W A G R ++A C HC GP PRT CG A G +R ++ P
Sbjct: 223 WGAVEG-RPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPP 281
Query: 168 TP 163
P
Sbjct: 282 VP 283
>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
Length = 249
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = -3
Query: 246 GPRAP-RTPPCGTAPPGRLRALSSPHPTPR 160
G R P R P APP R HP PR
Sbjct: 10 GRRPPCRRGPAAVAPPARFSCRCGTHPVPR 39
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 6 DSCLCDACYR--HVDRRANCPSYRKRPPGKQLDTNPLPS 116
D+ +C AC + H+ CP Y + P ++D N + S
Sbjct: 1381 DTLVCGACGQLGHMRTNKLCPKYGEDPETSEMDVNSIRS 1419
>04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940
Length = 196
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 427 CTLWCLVILRRHSAHAMSGASARW 356
C WCLVIL SA +SG + W
Sbjct: 13 CGRWCLVILAVASALGVSGPAFYW 36
>01_06_1437 - 37358912-37359226
Length = 104
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 237 APRTPPCGTAPPGRLRALSSPHPTPR 160
AP TPP +PPGR A P P PR
Sbjct: 40 APLTPPL--SPPGRTVADGPPPPPPR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,642
Number of Sequences: 37544
Number of extensions: 383547
Number of successful extensions: 1773
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -