Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2418
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    29   2.7  
Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc...    28   6.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 3   IDSC--LCDACYR-HVDRRAN-CPSYRKRPPGKQLDTNPLPSPNNTQSEKP 143
           +D+C   C+ C R +V R A   P+  +RPP ++L   P P    TQ   P
Sbjct: 65  VDNCQLACNTCTRKNVIRPATKAPNRMRRPPPRKLAQTPRPPVVTTQRPAP 115


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 3   IDSC--LCDACYR-HVDRRAN-CPSYRKRPPGKQLDTNPLPSPNNTQSEKP 143
           +D+C   C+ C R +V R A   P+  +RPP ++L   P P    TQ   P
Sbjct: 65  VDNCQLACNTCTRKNVIRPATKAPNRMRRPPPRKLAQTPRPPVVTTQRPAP 115


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 246 GPRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGSP 142
           GP  P  PP    PPG+  A  S  P P+   G P
Sbjct: 256 GPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDP 290


>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPRLKGGSPASQ 133
           P AP  PP     P +L    SP P       +PA+Q
Sbjct: 332 PTAPHPPPPAPVAPPKLHDYESPAPVADAHDAAPAAQ 368


>Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical
           protein K06B4.10 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +3

Query: 348 GEHHRALAPLMACALCRRRITKHHNVHFIHHGFQELNPILRESGIPVQFLERPL------ 509
           G H    A   ACA   RR  +H+ +H      Q     L    + V F   PL      
Sbjct: 32  GNHFGVAAACRACAAFFRRTVQHNKIHECGRNGQCF--FLSCKFLLVGFQISPLSSDARS 89

Query: 510 LCKACRY 530
           +CKACRY
Sbjct: 90  MCKACRY 96


>Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical
           protein F52F12.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 37  TSTGEPTAPRIVSDPPGSSSIRTPYHRPITH 129
           TS+  P  P   S PP SS   +    PITH
Sbjct: 193 TSSDTPKTPLTASSPPHSSGSESRVMSPITH 223


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 354 HHRALAPLMACALCRRRITKHHNV 425
           HH AL+P  +C LCRRR ++  +V
Sbjct: 377 HHHALSP--SCPLCRRRWSRQPDV 398


>U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc
           finger proteinC.e-MyT1 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 37  TSTGEPTAPRIVSDPPGSSSIRTPYHRPITH 129
           TS+  P  P   S PP SS   +    PITH
Sbjct: 193 TSSDTPKTPLTASSPPHSSGSESRVMSPITH 223


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 243 PRAPRTPPCGTAPPGRLRALSSPHPTPR 160
           PR PRTPP   +PP R   ++ P P  R
Sbjct: 144 PRVPRTPPP-RSPPPRRPPMTPPSPQRR 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,848
Number of Sequences: 27780
Number of extensions: 264830
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)