Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2417
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 30 1.8
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 29 3.1
02_05_1024 + 33582921-33583309,33583381-33583444 29 4.1
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 29 4.1
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323... 28 5.4
02_02_0310 - 8842286-8843314 24 6.5
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 28 7.2
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 28 7.2
05_06_0039 + 25113409-25113522,25113827-25113915,25114013-251141... 27 9.5
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 27 9.5
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 189 IVMGCISSKGWRTDSDGKDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSV 368
I+ ISS + DG HC ++ + N+G +S F+ SV YLF
Sbjct: 665 IIKFIISSLRHAIEIDGV-HCKFSSFGGSFNFGHEVS--NFVVSVFC---RYLFHLSHPS 718
Query: 369 KTRKHYVLADLG 404
K++KHY + +G
Sbjct: 719 KSKKHYFFSSIG 730
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 144 RPHVIVRAVCWLFSVIVMGCISSKGWRTDSDGKDHCVYNDDTNACNYGVGISVIAFIASV 323
R +++RAV WLFS++ + ++S + G D+ Y +GIS+IA + +
Sbjct: 7 RARLLLRAVAWLFSLLALVVMAS-----NKHGHGGAQDFDNYPEYTYCLGISIIAVLYTT 61
Query: 324 A 326
A
Sbjct: 62 A 62
>02_05_1024 + 33582921-33583309,33583381-33583444
Length = 150
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 462 WGKTEKPPIGTANNMQGAIAF 524
WG KPP+G +GA++F
Sbjct: 15 WGLNSKPPVGDGGEARGALSF 35
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 601 AASAPMRNRWKAKKAQATQANMEKKQNAIAPCMLFAVPIGGFSVLPQAL 455
A AP R++ A A A+ NA PC +A+ GF +P L
Sbjct: 19 ALPAPARSQSAATPAPASNEGFNCTANATYPCQAYALYRAGFGGVPLEL 67
>07_03_0763 -
21331534-21331779,21331871-21332021,21332093-21332330,
21332449-21332659,21332744-21332871,21333569-21333706,
21333825-21334644
Length = 643
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/82 (24%), Positives = 30/82 (36%)
Frame = -1
Query: 639 FRSRLPLRMPERTPHQRPCGTVGKRRKRRPPKQIWRRSRMQ*RPACCSPFRLAASQFCPK 460
F R L++P +P P T R + I S P A+ FC
Sbjct: 250 FSGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAILAISM----PTIALVLATIAAWFCST 305
Query: 459 HWTNSRIQQNTRRPRMQKNLSQ 394
W R+ + T RP+ ++ Q
Sbjct: 306 SWRRRRLARKTLRPKSSEDEMQ 327
>02_02_0310 - 8842286-8843314
Length = 342
Score = 23.8 bits (49), Expect(2) = 6.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 168 PP*RSHEAFE*KPEGQTRLQLFHHHTHR 85
P R E + E + R + FHHH H+
Sbjct: 244 PMKRFRHHHEEEEESEMRTKRFHHHHHK 271
Score = 22.6 bits (46), Expect(2) = 6.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -1
Query: 294 SRHHSYMHLCHHYRRNGPSHQNQ 226
S HH + H HH+ N Q
Sbjct: 186 SHHHHHRHHHHHHDENEEDEHEQ 208
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 124 TLRLLFKGLM*SSGRYVGCSA*L*WAAYHPRAGVLILMGRTIASIMMTQMHVTMV 288
T +L+KG SGRYV + + Y +A + L I S + Q H+ +V
Sbjct: 539 TPEVLWKGFQTRSGRYVFLISLVPQVIYFSKARSIFLFNYMIISAISQQWHIDVV 593
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 246 HCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLG 404
HC ++ + N+G +S F+ SV YLF K++KHY + +G
Sbjct: 758 HCKFSSFGGSFNFGHEVS--NFVVSVFC---RYLFHLSHPSKSKKHYFFSSIG 805
>05_06_0039 +
25113409-25113522,25113827-25113915,25114013-25114148,
25114231-25114305,25114456-25114577,25114680-25114755,
25115242-25115301,25115383-25115511
Length = 266
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 231 SDGKDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLA 395
SD +D V ++ N+ +G+SV FIA +A I+ + + + ++ H+VL+
Sbjct: 93 SDQQDGPVTFRSSSLSNFTLGVSVGYFIADLAMIL--WFYPSLGGMEYLVHHVLS 145
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 324 AFIVGEYLFEQMSSVKTRKHYVLADLGFSAF 416
AF+VG YL E+++ +K KH ++ D+ F
Sbjct: 384 AFVVGSYLKERLNKLK-EKHDIIGDVRGKGF 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,379
Number of Sequences: 37544
Number of extensions: 394245
Number of successful extensions: 1247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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