Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2416
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485...    28   5.6  
09_04_0180 + 15367737-15367755,15368874-15369739                       27   9.8  

>03_03_0206 +
           15447054-15447181,15448243-15448298,15448373-15448515,
           15448630-15448827,15448901-15449100,15449585-15449684,
           15449769-15450350,15450434-15450556,15451028-15451108,
           15451188-15451495,15451577-15451816,15452261-15452345,
           15452429-15452606,15453053-15453227,15453826-15453982
          Length = 917

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 496 AVQQSTMKNNSVPYLWRVEVSNSDCV*KSIRGEATNWGGA 615
           A + S      VP  W+  VS  D   KSI+   +NWGG+
Sbjct: 684 AKENSISDVTHVPPEWKQVVSTLDRRKKSIKKHLSNWGGS 723


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 538 SMVHYCFSSLTAVLLRIATTCDFSPVFDRGWHGPHGIL 425
           ++V YC    TA +LR +   +   VFDR    PHG L
Sbjct: 229 TIVLYCLQHATATILRASNGDEMMQVFDR----PHGNL 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,372
Number of Sequences: 37544
Number of extensions: 316133
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)