Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2416
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    29   2.2  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    29   2.2  

>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 353 FTPRVSVKKSDVKKLALNTPIWLRKYTVRSMPSTIEHWRKVT 478
           + P+ S+K++   K  LN PI+L KY + S   T    R +T
Sbjct: 154 YLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTYTSLRFIT 195


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 353 FTPRVSVKKSDVKKLALNTPIWLRKYTVRSMPSTIEHWRKVT 478
           + P+ S+K++   K  LN PI+L KY + S   T    R +T
Sbjct: 145 YLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTYTSLRFIT 186


>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 261 YTDIKQLINHRYYTFKPEETP--NKQNKTNHTALLLAFPSKSP 383
           Y DI  L + RY TFK ++T   +K  + NH   L++F  K P
Sbjct: 291 YNDIWSLPHWRYSTFKRDQTEIFHKILQLNHLFYLVSFGLKKP 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,186
Number of Sequences: 27780
Number of extensions: 293497
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)