Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2416
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = +3

Query: 288 HRYYTFKPEETPNKQNKTNHTALLLAFPSKSP-TLKNSH*TH-----RSG*E-SIPCGPC 446
           H  +T  P   P   +  + T  L     + P TL  S+ ++      SG + + PC P 
Sbjct: 338 HGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPS 397

Query: 447 HPRSNTGEKSHVVAILSSTAVND 515
            PR   G  + V+   +S+  +D
Sbjct: 398 PPRGPGGVPTSVIQAATSSVSDD 420


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 414 IGVFSASFLTSDFLTETRGVKLCD 343
           +GV  ++FL+S    ET  ++ CD
Sbjct: 232 LGVGVSNFLSSTRTAETGTIRKCD 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,005
Number of Sequences: 438
Number of extensions: 3321
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)