Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2415
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    74   1e-14
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   0.96 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.2  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   6.8  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   6.8  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   9.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.0  

>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
 Frame = +3

Query: 195 KLLVVGGGSGGCTVAA---------KFARRLNKDSVI------ILEPSNDHYYQPLFTLV 329
           K+LVVGGGS G +VA          +FA    KD+ +      I++ +  HYYQP +TL 
Sbjct: 30  KVLVVGGGSAGISVAHQIYNKFSKYRFANDQGKDTSLKPGEIGIVDGAKYHYYQPGWTLT 89

Query: 330 GAGVKRVSDTRRSAQSVLP-KAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVGLK 506
           GAG+  V+ TRR   S++P    K   +  ++++ + N + T+ G  I+Y+Y+V+A G+ 
Sbjct: 90  GAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVTQSGQEISYDYLVMAAGIY 149

Query: 507 SDYNKISRL 533
           +D+ +I  L
Sbjct: 150 TDFGRIKGL 158



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 520 KFPGLTEALNDTSSGVSTIYA 582
           +  GLTEAL+D ++ V TIY+
Sbjct: 154 RIKGLTEALDDPNTPVVTIYS 174


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
 Frame = -1

Query: 273 PSLYSVYGRI*QQLCNHPILHQQLAAYMNNLHYILKNLRSFYIRWTM-----IQNSTIVL 109
           PSL S    I  +   H +L Q+   +  +   +  + R   IRW       +Q S I+L
Sbjct: 48  PSLTSYTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIIL 107

Query: 108 YSCFF-----IYILEKGTCVRFRENF 46
           YSCF      + I     C+ +R  F
Sbjct: 108 YSCFLCSKHAVLISRDSDCIDYRAMF 133


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 291 SNDHYYQPLFTLVG-AGVKRVSDTRRSAQSVLPKA-AKWLRDSAETINAKANVVT 449
           +N  Y+  +FTL+   G+   S      QS+  ++ A+W    AE+INA+ANV+T
Sbjct: 33  NNPWYFILVFTLLSITGI--YSSLVAYQQSLYDQSLARWSAWYAESINAEANVIT 85


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 228 NHPILHQQLAAYMNNLHYILKNLRSFYIRWTMIQNSTIVLYSCFFI 91
           N  +LHQ +    N  +Y  KNL+ F +    + N    ++  F +
Sbjct: 416 NPDMLHQTILPNANRWYYFFKNLKLFVLDEAHVYNGIFGVHVAFVL 461


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 225 HPILHQQLAAYMNNLHYILKN 163
           HPIL+Q  A Y+ N++  L+N
Sbjct: 597 HPILNQATAEYITNIYCGLRN 617


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 545 SASVKPGNFIIIALQSNSDNDVLVIDDVSIF 453
           S +++PG+ I+IA +++S     ++D VS+F
Sbjct: 330 SKALEPGD-ILIAFKTDSHKSTYIVDFVSLF 359


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVI 278
           LV+GGGSGG   A + A+   K ++I
Sbjct: 11  LVIGGGSGGLASARRAAKHGAKVALI 36


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/95 (21%), Positives = 44/95 (46%)
 Frame = +3

Query: 222 GGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQSVLPKAAKW 401
           G   +  + A  L   +V ++   +  + + +   VG  +K + +    A   L  + K 
Sbjct: 308 GSSFIGLELAVVLKDHNVSVIGMESIPFEKVMGKEVGTALKALHEQNGIA-FYLENSIKE 366

Query: 402 LRDSAETINAKANVVTTKDGHVINYEYIVIAVGLK 506
           ++ S+   ++KA  +  KDG  I  + +++A G+K
Sbjct: 367 VKTSSND-SSKAEHIVLKDGQSIPADVVILAAGVK 400


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 464 VSIFRRHNIGFGVNRFGGISQPFRCFR*HALGGSPSVAHTFHSGSYQSEKGLIVMI 297
           + +++++  G   N F GISQ +  +R H+   + S        +YQ+   +I +I
Sbjct: 294 IQMYKQNTTGLPSN-FSGISQLYVTYRVHSKNATASSDSIPRPDNYQNSSDVISVI 348


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 72  TCVRFRENFNTIISVY 25
           TC  + ENFNT+IS +
Sbjct: 532 TCELYSENFNTVISSF 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,995
Number of Sequences: 5004
Number of extensions: 52667
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)