Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2415
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 42 5e-04
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 30 1.3
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 29 3.0
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 29 4.0
04_03_0565 + 17207582-17207811,17208026-17208320 29 4.0
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 28 5.3
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 5.3
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 28 5.3
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 7.0
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 28 7.0
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 28 7.0
10_08_0270 + 16378878-16380566 27 9.2
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 9.2
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 27 9.2
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Frame = +3
Query: 195 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 374
K++V+G G GG T RL V ++ P N + PL V G +
Sbjct: 58 KIVVLGTGWGGTTFLRNLDSRLY--DVQVISPRNYFAFTPLLPSVTCGTVEPRSVVEPIR 115
Query: 375 SVLPKAAK----W------LRDSAETINAKANVVTTKDGH---VINYEYIVIAVGLKSD 512
+L K W + S + I+ ++N+ T DG+ +++Y+Y+VIAVG +S+
Sbjct: 116 RILEKKGGDIKFWEAECFKIDSSNKKIHCRSNIGTNLDGNGEFLVDYDYLVIAVGARSN 174
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/102 (26%), Positives = 43/102 (42%)
Frame = +3
Query: 195 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 374
+++VVGGG G +A + V++L+P D+ P L + S RS
Sbjct: 8 RVVVVGGGIAGSLLAKTMQPHAD---VVLLDPK-DYLEIPWAEL--RSMVEPSFAERSLI 61
Query: 375 SVLPKAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVG 500
++ +N V T DG + Y+Y+VIA G
Sbjct: 62 YHRDYLTNATIVTSSAVNITEQAVLTADGQSLAYDYLVIATG 103
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHY 305
++VGGG+ GC +AA ++R V++LE Y
Sbjct: 52 IIVGGGTAGCPLAATLSQRFR---VLLLERGGSPY 83
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 213 GGSGGCTVAAKFARRLNKDSVIILEPS 293
GG GG V A ++ KD V+++EP+
Sbjct: 247 GGDGGAVVGCFEAAKVRKDRVLLMEPA 273
>04_03_0565 + 17207582-17207811,17208026-17208320
Length = 174
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 273 VIILEPSNDHYYQ--PLFTLVGAGVKRVSDTRRSAQSVLPKA--AKWLRDSAETINAKAN 440
V+ + P+ +Y Q P T G G VS RR ++VLP+ W R +
Sbjct: 57 VVEITPNPGNYIQGGPTMTQSGGGWWLVSGDRREIKAVLPREQHGVWRRQCRRPVQLHWW 116
Query: 441 VVTTKDG 461
VT +DG
Sbjct: 117 GVTWRDG 123
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +3
Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQSV 380
+VVGGG+ GC +AA A V++LE P G V+ ++ + +S
Sbjct: 58 IVVGGGTAGCPLAATLAGP-GGGRVLVLERGGAPAEFPPLATAGGFVRTLAMADPAPESD 116
Query: 381 LPKAAKWLRDSAETINAK 434
P D + A+
Sbjct: 117 APAQTFASEDGVPNVRAR 134
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 505 RAIIIKF-PGLTEALNDTSSGVSTIYAPGVLREDLVRPA 618
R + + F P + +ND GV YA LRE +V+P+
Sbjct: 488 RRLFMSFDPAIQRTINDEDGGVHKRYASPSLRERVVQPS 526
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 216 LHQQLAAYMNNLHYILKNLRSFYIRWTMIQN 124
LH + A+M+ Y ++N ++ WT + N
Sbjct: 212 LHHGIMAFMSYTDYYVRNASDLFLSWTNVSN 242
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +2
Query: 368 RPERVT*SSEMAERFRRND*RQSQCCDDERWTRHQLRVHRYRCWTEE 508
RP RV+ + R RR R+S DDER RH+ R HR R + E
Sbjct: 104 RPSRVSDDDKEGGRRRR---RRSTDSDDERGDRHRRR-HRRRSPSSE 146
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHY 305
++VGGG+ GC +AA ++ K V++LE Y
Sbjct: 53 IIVGGGTAGCPLAATLSQ---KYKVLLLERGGSPY 84
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHY 305
+++GGG+ GC +AA + R V++LE Y
Sbjct: 46 IIIGGGTAGCPLAATLSERYR---VLLLERGGSPY 77
>10_08_0270 + 16378878-16380566
Length = 562
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 174 CNANYSCKLLVV-GGGSGGCTVAAKFARRLNKDSVIILEPSNDHY 305
C A+ +C L+ G S C AA + RL + S L+P D Y
Sbjct: 367 CRASSACSLMECRDGPSNKCGSAASY-MRLFQSSTFCLQPQGDSY 410
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 172 IEELEKFLHTLDDDTKLNNRAVFMFLYL-YLGERYVCQVSRK 50
+EE K LH L D L A F LYL Y+ +C+V+ K
Sbjct: 22 LEEDSKALHFLQPDLVLFTGAPFALLYLYYIIYSLLCEVTLK 63
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 201 LVVGGGSGGCTVAAKFARRLNKDSVIILE 287
+VVGGG+ GC +AA + R V++LE
Sbjct: 60 IVVGGGTAGCPLAATLSER---SRVLLLE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,042
Number of Sequences: 37544
Number of extensions: 377742
Number of successful extensions: 1549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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