Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2415
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-18|AAF60938.1|  392|Caenorhabditis elegans Hypothetical...   116   1e-26
Z82265-3|CAB05173.1|  471|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    29   2.1  
AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin r...    29   2.1  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    29   2.1  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC024882-18|AAF60938.1|  392|Caenorhabditis elegans Hypothetical
           protein Y9C9A.16 protein.
          Length = 392

 Score =  116 bits (279), Expect = 1e-26
 Identities = 52/110 (47%), Positives = 73/110 (66%)
 Frame = +3

Query: 195 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 374
           KLLVVGGG+GG  +A+KF R+L   S+ I+EP  DHYYQP FTLVG G+  +   R+   
Sbjct: 41  KLLVVGGGAGGLGIASKFTRKLPSGSLGIIEPLEDHYYQPGFTLVGGGLMTLDSNRKKQV 100

Query: 375 SVLPKAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDYNKI 524
           +++PK A W++D  ET N   N V  + G  I+YEY+VIA+G+   ++ I
Sbjct: 101 NLIPKGATWIQDKVETFNPSQNTVVLRGGEEISYEYMVIAMGIHLRFDMI 150


>Z82265-3|CAB05173.1|  471|Caenorhabditis elegans Hypothetical
           protein F02H6.5 protein.
          Length = 471

 Score =  109 bits (261), Expect = 2e-24
 Identities = 51/110 (46%), Positives = 71/110 (64%)
 Frame = +3

Query: 195 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 374
           KLLVVGGG+GG   A+KFAR+L + SV I+EP  DHYYQP FTLVG G+  +   R   +
Sbjct: 13  KLLVVGGGAGGLGAASKFARKLPRGSVGIIEPREDHYYQPGFTLVGGGLMSLEANRGKQK 72

Query: 375 SVLPKAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDYNKI 524
            ++PK A W++D  +      N V  + G  I Y+Y+VIA+G++  Y+ I
Sbjct: 73  DLIPKNATWIQDKVQKFEPAKNSVKLRGGDEITYDYMVIAMGVQLRYDMI 122


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 183 NYSCKLLVVGGGSGGCTVAAKFARRLNK 266
           +++  L+V+GGGSGG   AAK A RL K
Sbjct: 170 DHTYDLIVIGGGSGG-LAAAKEASRLGK 196


>AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin
           reductase homolog protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 183 NYSCKLLVVGGGSGGCTVAAKFARRLNK 266
           +++  L+V+GGGSGG   AAK A RL K
Sbjct: 28  DHTYDLIVIGGGSGG-LAAAKEASRLGK 54


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 183 NYSCKLLVVGGGSGGCTVAAKFARRLNK 266
           +++  L+V+GGGSGG   AAK A RL K
Sbjct: 170 DHTYDLIVIGGGSGG-LAAAKEASRLGK 196


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 497 NSDNDVLVIDDVSIFR-RHNIGFGVNRFGGISQPFRCFR*HALGGSPSVAHTFHSGSYQS 321
           N D+  + I+++ I    H++    ++F  I + + CF   ++  + SV+HT+HS    +
Sbjct: 251 NHDDGAVYIEEIGIAPDMHHLKISCSQFDIIHEKY-CFELVSVNRNSSVSHTWHSVCVST 309

Query: 320 E 318
           E
Sbjct: 310 E 310


>Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical
           protein F52H3.2 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 198 LLVVGGGSGGCTVAAKFARRLNKDSVIILEPSN 296
           ++V+GGG  GC  AA  A R   ++V++ +  N
Sbjct: 19  VIVIGGGHAGCESAAA-AARCGSNTVLVTQNKN 50


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -3

Query: 295 LLGSKIMTESLFSLRANLAATVQPPDPPPTTSSLHE*FALHIEELEKFLHTLDD-DTKLN 119
           LL S+++++ +F  +++       P+P   +SSL +   L+ +  ++ L   DD D  L 
Sbjct: 560 LLPSEVVSQDVFGSQSDSTVPESAPEPAEISSSLVDSDDLNSKSAQQVLDDADDEDMDLM 619

Query: 118 NRAVFM 101
           N  V +
Sbjct: 620 NADVIL 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,799
Number of Sequences: 27780
Number of extensions: 304145
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)