Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2415
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 AAKWLRDSAETINAKANVVT 449
           A +WLRD+AE       ++T
Sbjct: 229 ALRWLRDNAEAFGGDPELIT 248


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 AAKWLRDSAETINAKANVVT 449
           A +WLRD+AE       ++T
Sbjct: 229 ALRWLRDNAEAFGGDPELIT 248


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 IKTRSLFWNLVMIITISPFSLW*E 333
           ++T++L  N ++ I  +PF  W E
Sbjct: 91  VRTKTLVKNAIVTIDATPFRQWYE 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 229  QPPDPPPTTSS 197
            QPP PPP  SS
Sbjct: 1354 QPPPPPPPPSS 1364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +2

Query: 206 CWWRIGW 226
           CWW+I W
Sbjct: 489 CWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +2

Query: 206 CWWRIGW 226
           CWW+I W
Sbjct: 542 CWWKICW 548


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 186 YSCKLLVVGGGSGGCTVAAK 245
           Y   + V+GG S GCT   +
Sbjct: 132 YKVDVEVIGGASRGCTAVLR 151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 186 YSCKLLVVGGGSGGCTVAAK 245
           Y   + V+GG S GCT   +
Sbjct: 132 YKVDVEVIGGASRGCTAVLR 151


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 508 AIIIKFPGLTEALNDTSSGVST 573
           A+  KFP L  A   +S  VST
Sbjct: 341 ALFAKFPSLACAAEPSSDAVST 362


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 489 IAVGLKSDYNKISRLD 536
           +    K+DY KIS LD
Sbjct: 170 VVTAYKADYTKISTLD 185


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 402 LRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDY 515
           L++ ++TIN   ++  + DG   NY     +VG K ++
Sbjct: 467 LKELSKTINFTYSLALSPDGQFGNYIIKNNSVGGKKEW 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,074
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)