Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2414
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U12964-12|AAA91216.1|  362|Caenorhabditis elegans Hypothetical p...    29   2.4  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   3.1  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   3.1  
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 678  RCGPLRYYASWRKGGCGCKAIKLGN 604
            R  P  Y   W K  C CKA+  GN
Sbjct: 1250 RTSPTAYCDCWEKSSCNCKALIAGN 1274


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 678  RCGPLRYYASWRKGGCGCKAIKLGN 604
            R  P  Y   W K  C CKA+  GN
Sbjct: 1250 RTSPTAYCDCWEKSSCNCKALIAGN 1274


>U12964-12|AAA91216.1|  362|Caenorhabditis elegans Hypothetical
           protein F26F4.1 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 583 VTGKTPGVTQLNRLAATSPLSPAGVIAKRPAPIALP 690
           +T +TP   +   ++  SP  P G +A  PAP  +P
Sbjct: 314 ITSRTPARQKPAAMSQPSPFGPFGALAGAPAPAPVP 349


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 539 IGRIGYRAPPRVFFFFFYI 483
           IG  G+ APP VF FFF++
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 539 IGRIGYRAPPRVFFFFFYI 483
           IG  G+ APP VF FFF++
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 237 SLIIVFSYIC*SFVLCLVNLLIICSV 160
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 237 SLIIVFSYIC*SFVLCLVNLLIICSV 160
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 213 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ*T 94
           IC  + L ++ +  +   +C  NI  FL++F L+F ++ T
Sbjct: 146 ICFVWTLIIITIRNLVEWTCDSNIFTFLIIFYLVFILRFT 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,619
Number of Sequences: 27780
Number of extensions: 342276
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)