Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2412
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595...    31   0.69 
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    31   1.2  
07_03_0846 - 21983581-21986055                                         30   2.1  
11_06_0598 - 25391923-25393197                                         28   6.4  

>05_04_0140 -
           18358997-18359082,18359255-18359318,18359469-18359583,
           18360101-18360216,18360420-18360541,18360628-18360757,
           18361328-18361420
          Length = 241

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 YQSRTRLNIVYLIEILFRALIYEHNINGADIINL 254
           Y     + +V+L+ +LF  L Y HN NG +  NL
Sbjct: 152 YTIHGNVYLVFLVLVLFSCLTYVHNANGIESFNL 185


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 527 FPDTPNRTTVAVG-DRFGDDDSTTPRLPIEANGDLELI 637
           F D P R T+A     FG DDS+ PRL  E N  L+ +
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRLD-ELNKTLQAL 697


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 585 SSSPNLSPTATVVLLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 448
           S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 81  SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -2

Query: 657 GNLLSLSINSKSPFASMGSLGVVESSSPNLSPTATVVLLGVSGNPIGLDPAKEGR*HSTS 478
           G LL+LSI    P  S G++   +  +  +SP   +  L +SG   GL          T 
Sbjct: 229 GCLLTLSIQINHPATSEGTVPETDKLATLVSPPKLLQSLNISGITSGLPD------WITE 282

Query: 477 VDEVSNITTAATF 439
           +D+++ IT + T+
Sbjct: 283 LDQLTKITLSNTY 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,504
Number of Sequences: 37544
Number of extensions: 344099
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)