Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2412
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 669 CLSTGNLLSLSINSKSPFASMGSLGVVESSSPNLSPTATVVL 544
           C     L +      SPFA +G  GV   S+  L PTA+ ++
Sbjct: 784 CEKVSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLV 825


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 578 DDDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRK 715
           +D++   +L  ++ G L+L+D  S LP  K+    + W+  +   K
Sbjct: 316 EDEAVVAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMK 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,967
Number of Sequences: 27780
Number of extensions: 309508
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)