Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2412
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 581 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINW 691
           D+S T    I   G + L D++   P+D+ P W  N+
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNF 663


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 581 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINW 691
           D+S T    I   G + L D++   P+D+ P W  N+
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNF 663


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 534 IHLTGPP*LSETDLAMTTQQPQ 599
           +HLT PP  S +  A  +Q PQ
Sbjct: 673 LHLTSPPARSPSSQAQASQCPQ 694


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 608 WEVLGLLSRHRQICLRQLRWS 546
           WE L  L + R+ C R ++W+
Sbjct: 461 WEFLLKLLQDREYCPRYIKWT 481


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 567 SPTATVVLLGVSGNPIGLDP 508
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 681 NQKGCLSTGNLLSLSINSKSPFASMGSL 598
           + K  LS  +LLS  +   +P  SMG+L
Sbjct: 107 DNKSYLSLRSLLSADVAVATPLISMGAL 134


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 567 SPTATVVLLGVSGNPIGLDP 508
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,158
Number of Sequences: 438
Number of extensions: 3903
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)