Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2409
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 32 0.080
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 32 0.080
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 27 3.0
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 4.0
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 4.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.2
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 9.1
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.1
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 9.1
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 31.9 bits (69), Expect = 0.080
Identities = 30/121 (24%), Positives = 49/121 (40%)
Frame = +1
Query: 115 FCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQ 294
FC G+ + K W E S N +V T L+ G+LL +++ VM E
Sbjct: 45 FCVFGASGIYLDKLVNK--WFGYEVLDLANSDNALV-TGLATSSGILLYSSWASVMQESF 101
Query: 295 ENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIYIHHREKNNGQTDLLVRNLS 474
+E + FD L + C FF ++ + + ++H + QT L + S
Sbjct: 102 HFLEKISM------FDTFLVRVFQFCAFFFGGIVFYIFNHFLHKWLHESSQTGFLHDHFS 155
Query: 475 V 477
V
Sbjct: 156 V 156
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 31.9 bits (69), Expect = 0.080
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 238 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIY 417
FG GV+L+T F+H++ + + ++ +D++ L C F + L+E L++ Y
Sbjct: 106 FGSGVILATAFIHLLAPACNKLYDPCLDDLFGGYDWAPGICLISCWFIL--LLEVLLNRY 163
Query: 418 IHHR 429
+ R
Sbjct: 164 VEWR 167
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 7 HRANRQTNKMAYRHSHDHDDDTDGIV 84
+R T +A +D+DDDTDGI+
Sbjct: 291 NRLAEMTAHLAESSDYDNDDDTDGII 316
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1
Query: 94 GISMVVLFCASMICG--LIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTT 267
G+S +V++ A +I L+ + E +GT K R+ M L GG L+ T
Sbjct: 130 GLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGLAGLAGGALIGLT 189
Query: 268 FMHVMPEVQENIENLQA 318
P V + L A
Sbjct: 190 GGLAAPFVAAGLGTLFA 206
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 263 VESSTPPPKESRVITTRFVDLNVPASSTESHRNFLAMI*GIRPHIMEAQKSTTM--EMPL 90
VE P P+E I +P SH+N +A++ I H+ E + +PL
Sbjct: 231 VEPDPPSPEEICCIMYTSGSTGLPKGVILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPL 290
Query: 89 ANTI 78
A+ +
Sbjct: 291 AHIL 294
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 592 LRDCGCSLHVPYSFRVIQFRI 530
+ DC C LHV + R++ +R+
Sbjct: 224 INDCDCGLHVCENTRILMYRL 244
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 423 MNVYVHQFFYQIHYEEAAARQ*GSQ*EIKFLENVPRLQIFNVLLDFRH 280
+++Y+ +FF + Y+ AA GSQ +K ++N I + ++H
Sbjct: 513 LDMYIQKFFDYVGYQTAALAACGSQSFLKRIKNSVNKSISSTTDIYQH 560
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 373 GFFIMYLIEELVHIYIHHREKNNGQ-TDL 456
G + Y+ +L H ++HHR N TDL
Sbjct: 274 GAILGYVFYDLTHYFLHHRRMPNAYLTDL 302
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 EDAGTFKSTNRVV--MTLLSFGGGVLLSTTFMHVMPEVQENIEN 309
E+A T ++T VV +TL+ FGG +H+ V ++++
Sbjct: 417 ENAQTLRATTLVVVVLTLIIFGGTTARMLEILHIETGVAADVDS 460
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 321 EHSPRI*FLTDSPIDVLRLLHNVSDRRIGAHIHSSQREE 437
EHS R + SP+D L L H +R++ S+ E+
Sbjct: 34 EHSKRSGYHGLSPLDALALKHRDLNRKLNLRAMMSKSED 72
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 307 NLQARNILQEFDFSLTPLLTCCG---FFIMYLIEE 402
N+Q LQ +FS P++ CG + + Y++E+
Sbjct: 417 NIQKVQWLQPSEFSSRPVIVICGEDAYTVAYIVED 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,425
Number of Sequences: 5004
Number of extensions: 55221
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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