Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2407
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    32   0.088
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   1.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   3.3  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.7  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 519 AAYAPALAGSKTVVSQSLTQSHSRPDRSFGSPTPATGFGYA 641
           A   PA A SKT+VS++++ S ++        TP++ F YA
Sbjct: 324 ATSPPATADSKTIVSKTISASTTQQTEPLQQTTPSSDFEYA 364


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 574  VRDWETTVLLPARAGAY--AACPEHW 503
            +RDWE  V++ +    +  A CPEHW
Sbjct: 953  IRDWEGGVVMISHNEEFVSALCPEHW 978


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 550 LLPARAGAYAACPEHWSTI 494
           ++PA+  AY +CP+ WS I
Sbjct: 490 IVPAKERAYLSCPKVWSKI 508


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 546 SKTVVSQSLTQSHSRPDRSFGSPTPA 623
           S+T+ S     ++  P+R F SPTPA
Sbjct: 60  SRTLRSSESVHTNHGPERVFESPTPA 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,582
Number of Sequences: 5004
Number of extensions: 23585
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)