Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2407
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031847-8|CAI19444.2|  634|Homo sapiens ring finger protein 207...    31   2.9  
AK127700-1|BAC87091.1|  243|Homo sapiens protein ( Homo sapiens ...    31   2.9  
BC032735-1|AAH32735.1|  364|Homo sapiens RNA binding motif prote...    31   3.8  
BC000307-1|AAH00307.1|  364|Homo sapiens RNA binding motif prote...    31   3.8  
CR457257-1|CAG33538.1|  423|Homo sapiens RNPC4 protein.                31   5.0  
BC024208-1|AAH24208.1|  423|Homo sapiens RNA binding motif prote...    31   5.0  
BC002566-1|AAH02566.1|  424|Homo sapiens RNA binding motif prote...    31   5.0  
AF087905-1|AAP97203.1|  425|Homo sapiens splicing factor SF2 pro...    31   5.0  

>AL031847-8|CAI19444.2|  634|Homo sapiens ring finger protein 207
           protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 665 ASPWVSPVSIPEARGRRRRPKGAIWAGMGLGQ-----RLGDHRLAAGEGGSV 525
           AS   +P S+PE R +   PKG  WA  GL +      +  HR     GG V
Sbjct: 575 ASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRSKQKNGGDV 626


>AK127700-1|BAC87091.1|  243|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45800 fis, clone NT2RI2028537. ).
          Length = 243

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 665 ASPWVSPVSIPEARGRRRRPKGAIWAGMGLGQ-----RLGDHRLAAGEGGSV 525
           AS   +P S+PE R +   PKG  WA  GL +      +  HR     GG V
Sbjct: 184 ASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDHHRSKQKNGGDV 235


>BC032735-1|AAH32735.1|  364|Homo sapiens RNA binding motif protein
           4 protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 498 VLQCSGHAAYAPALAGSKTVVSQSLTQSHSR---PDRSFGSPTPATGFGYAHG 647
           +L  SG AA A A A +   V+ + T  + R   P R   +P P  G GY +G
Sbjct: 276 LLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYG 328


>BC000307-1|AAH00307.1|  364|Homo sapiens RNA binding motif protein
           4 protein.
          Length = 364

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 498 VLQCSGHAAYAPALAGSKTVVSQSLTQSHSR---PDRSFGSPTPATGFGYAHG 647
           +L  SG AA A A A +   V+ + T  + R   P R   +P P  G GY +G
Sbjct: 276 LLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYG 328


>CR457257-1|CAG33538.1|  423|Homo sapiens RNPC4 protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 561 SQSLTQSHSRPDR-SFGSPTPATGFGYAHGTYPRTR 665
           S+S ++ H R DR  + SP  ATG+ Y H   P  R
Sbjct: 95  SESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFR 130


>BC024208-1|AAH24208.1|  423|Homo sapiens RNA binding motif protein
           23 protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 561 SQSLTQSHSRPDR-SFGSPTPATGFGYAHGTYPRTR 665
           S+S ++ H R DR  + SP  ATG+ Y H   P  R
Sbjct: 95  SESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFR 130


>BC002566-1|AAH02566.1|  424|Homo sapiens RNA binding motif protein
           23 protein.
          Length = 424

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 561 SQSLTQSHSRPDR-SFGSPTPATGFGYAHGTYPRTR 665
           S+S ++ H R DR  + SP  ATG+ Y H   P  R
Sbjct: 95  SESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFR 130


>AF087905-1|AAP97203.1|  425|Homo sapiens splicing factor SF2
           protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 561 SQSLTQSHSRPDR-SFGSPTPATGFGYAHGTYPRTR 665
           S+S ++ H R DR  + SP  ATG+ Y H   P  R
Sbjct: 95  SESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFR 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,351,168
Number of Sequences: 237096
Number of extensions: 1059862
Number of successful extensions: 3462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)