Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2407
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical
           protein B0511.8 protein.
          Length = 523

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 586 EWDWVRDWETTVLLPARAGAYAACPEHWSTISYW 485
           E  W RDW  T++   +A      P H+ T+ Y+
Sbjct: 122 EKTWRRDWHPTLMATRKAWGIPPTPAHFDTLDYY 155


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 626 RGRRRRPKGAIWAGMGLGQRLG 561
           RG R++P+G  W G G+G RLG
Sbjct: 223 RGARQQPRGHQWPG-GVGARLG 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,399,707
Number of Sequences: 27780
Number of extensions: 143699
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)