Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2407
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 610 DPKERSGREWDWVRDWETTVLLPARAG 530
           +P ++   +W+WV +W+  +     AG
Sbjct: 618 NPHQQHLDQWNWVYEWKELIPSHIMAG 644


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 519 AAYAPALAGSKTVVSQS---LTQSHSRPDRSFGSPTPA 623
           +A  PA     T + ++   L  S SR     GSPTPA
Sbjct: 626 SAGTPAAFNISTTIYENQNCLDASSSRRGSKIGSPTPA 663


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 552 TVVSQSLTQSHSRPDRSFGSPT 617
           T  S S T S    DRS GSP+
Sbjct: 180 TASSTSSTASSRNSDRSAGSPS 201


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 608 PKGAIWAGMGLGQRLGDHRLAAGEGGSVRGMSRAL 504
           P G IW   G  ++LG   +A      + G S AL
Sbjct: 162 PAGWIWGDQGFLKKLGAVDIAGSGAVHLVGGSSAL 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,584
Number of Sequences: 438
Number of extensions: 1954
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)