Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2406
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    28   1.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.1  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -1

Query: 424 HCLLILYEQGPRIECW-------ACTGFAMYRPAALLFHHHLTPRV 308
           +C L++   GP    W        C+ F  Y+ A L FHH LTP V
Sbjct: 28  NCSLVI--DGPSFAFWLWFSQGIVCSDFQGYQKAVLDFHHLLTPLV 71


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 433 VLPHCLLILYEQGPRIECW 377
           ++P C + LYE+GPR+  W
Sbjct: 22  LIPKCTIDLYEKGPRLGGW 40


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 249 SYSQIGYGSNYAPPRRPLRPTRG 317
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 385 QSVDPVHIELVDSEVERRASLPPSNALPPV 474
           +S+ P H+  +D  + R  S+  S ALP V
Sbjct: 628 KSLPPKHLPSLDETISREMSIASSEALPQV 657


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 252 YSQIGYGSNYAPPRRPLRPTRG 317
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 527 GALRGRRCLIKSLTSIGVTGGNAFEGGKEALRSTSLSTNSI*TGS 393
           G L G+     S  S G+ GG+ F   K A      +TN+  TG+
Sbjct: 305 GGLFGQNNNTTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGT 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,991
Number of Sequences: 5004
Number of extensions: 62388
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)