Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2406
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 32 0.39
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 32 0.51
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 30 2.1
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 30 2.1
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 29 2.7
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 2.7
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 29 3.6
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 29 4.8
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 29 4.8
02_03_0162 + 15834714-15835576,15835696-15836434 29 4.8
02_03_0158 - 15816832-15817570,15817690-15818552 29 4.8
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 29 4.8
12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506 28 6.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 8.4
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 28 8.4
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 469 PVTPMEVKDLIKHLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMAN 621
P + E+KD + + P KAPG DG + N + K P+ L +L I + +AN
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 412 LVDSEVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDG 540
++ +++ S PP AL P P+++KD+ L+PR P S G
Sbjct: 392 VIPVQIKDVQSQPPKEALSPAIPVQIKDV--QLQPRNEPVSIG 432
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 653 SASFHTAGKIQFAIAALKIDANITMS---WTGRSLITRLDIPSEPGALRGRRCLIKSLTS 483
+A F+T ++ + A DA + S W RSL+ R D+P ALR +L
Sbjct: 134 NAGFYTRASNEY-VRASGWDARLVNSSYRWVERSLVFRPDVPPWQAALR------DALLE 186
Query: 482 IGVTGGNAF 456
+GVT N F
Sbjct: 187 VGVTPDNGF 195
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 439 ASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIK 561
A LPP PPVT + +HL PR+AP R+ K
Sbjct: 152 AGLPPPPP-PPVTGGAFRRYARHLGPRRAPKPGACGQRMFK 191
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 484 EVKDLIKHLRPRKAPGSDGISNRVIK 561
EV +LIK ++P KAP DGI+ +K
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLK 251
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 130 IRMRALQRDVKSRIAEVRDARWSDFLERLAPSQRSYYRLARTLK 261
+R++AL + +SR+A+ + + DF+ L P R Y R+ +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 403 HIELVDSEVERRASLPPSNALPPVTPMEVKDLIKHL--RPRKAPGSD-GISNRVIKLLPV 573
HIEL E +A PP+ A+ P + K I H+ P K P + + + LLP+
Sbjct: 497 HIELDLPEAPEKAPKPPAQAVDPFSKFGPKKEISHIFRSPEKRPPKELSFAFTGLTLLPI 556
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 539 PSEPGALRGRRCLIKSLTSIGVTGGNAFEGGKEALRSTS 423
P G ++ RRCL KSLT AF KE L S
Sbjct: 730 PISSGGIKARRCLPKSLTVDADQDQEAFYSDKENLTPVS 768
>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = -3
Query: 683 VYRGLCMPITSASFHTAGKIQFAIAALK-IDANITMSWTGR--SLI-TRLDIPSEPGALR 516
V+RG+C P T+ AG ++ +A L+ DA + + G +L+ R+D+ AL
Sbjct: 933 VHRGVCTPATTFCLLEAGAVEGLLACLENDDARVVDAALGALCTLVDDRVDVEKAVVALA 992
Query: 515 GRRCLIKSLTSIGVTGGNA 459
G+ + L ++ GN+
Sbjct: 993 GQGAARRVLAALRQHRGNS 1011
>02_03_0162 + 15834714-15835576,15835696-15836434
Length = 533
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 106 RYPTVDNRIRMRALQ-RDVKSRIAEVRDARWSDFLERLAPSQRSYYRLARTLKS 264
R+ +VD+ + + A + +SR+A+ + + DF+ L P R Y R L+S
Sbjct: 220 RFESVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQS 273
>02_03_0158 - 15816832-15817570,15817690-15818552
Length = 533
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 106 RYPTVDNRIRMRALQ-RDVKSRIAEVRDARWSDFLERLAPSQRSYYRLARTLKS 264
R+ +VD+ + + A + +SR+A+ + + DF+ L P R Y R L+S
Sbjct: 220 RFESVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQS 273
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +1
Query: 448 PPSNALP----PVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVM-LASIFN 606
PP+ LP P T + +HLRPR+ P G R+ K L M +A+ +N
Sbjct: 203 PPAPELPATTTPATGGAFRRYARHLRPRRLPKPGGCGQRMFKTAMSVLTKMHVAATYN 260
>12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506
Length = 122
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 436 RASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGI 543
R S P LPP P + K L + +P A G+D I
Sbjct: 17 RMSFSPLGLLPPPDPQQQKPLRQERQPEMAIGADKI 52
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 421 SEVERRASLPPSNALPPVTPMEV 489
SEV RR PP LPP+ PM++
Sbjct: 178 SEVARRYYEPPQVMLPPLAPMQL 200
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 581 MSWTGRSLITRLDIP-SEPGA 522
MSW RSL T L+IP +PGA
Sbjct: 1 MSWLARSLATSLNIPEDDPGA 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,875,246
Number of Sequences: 37544
Number of extensions: 481556
Number of successful extensions: 1250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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